Genie, UC Berkeley/UC Santa Cruz/ Neomorphic Inc.
- Martin G. Reese, David Kulp, Hari Tammana, David Haussler
- Generalized hidden Markov model with optional integration of EST hits and homology searches (Genie).
- Trained on Drosophila data
- Semi-automatic, in that the overlaps of the analyzed sequence contigs (110kb) where manual run again with Genie to resolve conflicts.
- BLAST used for homology searches on non-redundant protein database (nr).