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2nd Chromosome: Source Hoskins et al.
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STS Cytological
location		 Flanking
sequence		 Nucleotide
position		 Oregon R Canton S w;iso2;iso3 P strain 1
Q1028		 P strain 2 Release 1
y;cnbwsp		 RFLP?
Dm044721D1-21D2TCTCT - ACGGC449C(37)C(40)C(42)T(17) C 
  TCTCT - GACCT C(32)TT(32)    CTT 
Dm037521E3-21F3TACGG - AGTGT32A(29)A(27)G(30)A(27) ABscGI
  GTCGC - CTGGT103C(32)C(33)A(21)C(37) C 
Q 103722D1-D2     Q1037Q1040  
Dm264123A1-23A3ACTTG - CCCAG32A(40)A(51)G(56)A(47)A(42)GSimI HaeIII
  TCCAT - AAGAA107G(56)G(56)A(48)A(48)A(46)GNlaIII
  GGCCA - CGGCT174G(35)A(40)G(37)G(37)G(35)AAciI
Dm061123E1-23E4ACAAA - CTTTA A(56)AC(42)T(45)AG(40)T(51)AG(45)T(45)AG(45)T(51)AG(51)TAGAluI
  ATCTT -TATAG153C(48)C(46)T(56)C(46)C(46)C 
  ACTCG - TGTGT169C(51)C(51)C(27)G(56)G(56)C 
  GCCAC - CAGTT186T(45)G(45)C(45)C(45)T(34)G(34)T(40)G(45)T(51)G(51)CCCviRI PstI
Dm223525A3TATTA - AAATC141  G(48)A(42)A(37)AMseI
  CATAT - GATAT156-163DEL(98)DEL(98)DEL(98)TATAATAT (42)TATAATAT (42)TATAATATNdeI
  GTAAT - ATTGT174A(40)T(35)T(56)A(40)A(42)A 
  ATTGG - TTG233T(56)T(56)T(56)C(44)C(56)T 
  TTG - AGTAA237-238G(56)A(56)G(56)A(56)G(56)A(56)T(42)T(40)T(42)T(40)GA 
Dm220726D1-26D2TCCGT - TCCAG28G(51)G(51)G(40)A(45)A(45)GBspGI
  TCTTC - GT118G(56)T(56)T(42)G(44)G(43)G 
  GT - TAGTT121G(51)A(56)A(37)G(35)G(40)G 
  CGTCC - AGACG148T(51)C(51)C(40)C(46)C(46)TBfaI
  AGGTA - TCGTT163G(40)G(45)G(40)C(40)C(45)GRsaI
Dm301529A2AACTG - CTTTT23T(40)C(56)T(34)T(35)C(42)C 
  TGTTT - AAAGT114A(56)G(56)A(44)A(56)G(56)GDraI MseI
  AACAC - CGGTT147T(39)A(56)T(35)T(39)A(38)A 
  CAACC - GGTGC171T(31)A(32)A/T(14)A(56)A(42)A 
Dm027429A5-29B4GGTAC -CGGTA741G(29)G(35)G(38)T(42)G(37) AciI ThaI
  TTAAT - CAATT805G(40)G(42)G(51)A(44)G(42) CviRI
  GCCGA - AGGTG832C(40)C(40)C(42)T(46)C(56)T 
Q 104029C1-C2     Q1040Q1042  
Dm043430A3-30A6TTTTT - AACAT73-75A(35)A(35)A(35)T(35)A(35)A(34)A(21)A(27)A(27)T(21)T(27)T(29)T(4)T(4)T(4)TAA 
  TAGGC - AAAAA113-114A(56)A(56)A(47)C(47)A(13)A(13)DEL(98)DEL(98)AC 
Dm065231F3-32A1AGCAA - CGAAA742-743C(9)A(9)C(37)C(37)C(24)A(24)T(46)T(33)C(24)A(25)CABsbI
  AGTTT - AACGA821A(51)A(51)A(42)G(42)A(26)ADraI MseI PmeI
  TTATG - AATGC900G(51)G(56)G(44)C(37)G(42)GCviRI
  TACAA - TTGTC929C(46)T(56)T(48)T(13)T(44)TTsp509I
Dm404832A1-32A2CATAC - TTAGA113T(56)A(56)A(42)A(35)T(42)A 
  GGTTG - CGATA168C(46)G(42)G(37)G(35)C(35)G 
Dm337433A1-33A2GATAT - GCAGT733T(51)G(40)G(44)G(42)T(44)GCviRI
  TCCCA - CGGAT758-759A(42)A(42)G(42)T(43)G(42)T(42)G(26)T(35)A(24)A(46)GT 
  TAAAA - GAAAT769T(42)C(51)C(56)C(42)T(44)C 
  GCATT - ACACA802G(40)A(51)A(56)A(33)G(33)AMseI
  CACAG - GAA809C(37)T(43)T(44)T(42)C(33)T 
  GAA - GTACG813T(42)A(40)A(42)A(51)T(42)A 
Dm211233A1-33A2TAAAA - TTATG67T(35)G(32)T(56)T(56)G(45)TTsp509I
  AACAT - AATCG104A(42)T(45)A(56)A(56)A(42)A 
  GAGAA - AGCGG125A(56)G(51)A(42)A(46)G(42)ABsrBI
Dm024033A3-33A8ATGTG - GTGCA514C(24)C(24)T(56)C(37)C(47)T 
  CATAT - TTTGG546DEL(27)DEL(52)DEL(48)GTAT(44)DEL(33)DELNdeI
Dm247933D4ATAGT - GGCAA75A(17)A(40)A(40)A(45)T(40)  
  TTTTC - CATTG110G(37)G(56)G(44)G(56)T(44)G 
Dm363534C1-34C2CCGCA - AATCG1494C(27)CT(40)C(44)C(42)T 
  GCTTG - ATAAA1552A(27)GA(42)A(56)G(42)A 
  AAAAT - TAAGA1560G(33)TG(56)G(44)T(29)GMseI Tsp509I
Dm039334D1-34D6TAACA - TAATT50A(42)A(42)T(37)A(33)A(37)AMseI VspI
  ACTGC - GTGAG191-192T(46)C(33)A(42)A(42)A(48)A(56)A(29)A(29)T(38)C(38)TCBssSI CviRI
Dm001235A1-35A2AATTT - TAAAG74T(42)G(23)T(42)G(51)T(44)TDraI MseI
Q 104235E1-E2     Q1042Q1805  
Dm004335F1-35F2GATGG - CAGTC60A(30)AA(35)A(40)T(37)A 
Dm245136B3-36C1TCCTT - AGACA108G(40)A(45)G(44)A(56)A(32)GAflII MseI
  AGAAT - AA125T(51)C(45)T(40)C(56)C(56)T 
  AA - AGT A(40)AT(40)T(45)AA(51)A(45)AT(56)T(56)AA(51)T(56)AA(40)AAT 
  AGT - AAT134T(40)C(56)T(45)C(51)C(38)T 
  AAT - CCCAA  A(45)T(45)TA(45)TA(51)TT(56) A(45)T(45)TA(51)TA(40)TT(40)A(56)T(56)TA(46)TA(38)TT(40)  
  TCAAA - GTGAA157C(42)T(56)C(51)T(56)T(56)CTaiI
  GTGAA - GTACT163-164A(56)T(42) A(56)T(56)  ATScaI
Dm035339A3-39A7CTGCT - CAGCT26G(51)A(42)G(40)A(42)A(42)GCviRI PstI
  TTCCG - GTATC41A(51)C(40)C(42)C(42)C(37)CAciI ThaI
  CTCGA - ACAGC60C(47)T(34)C(40)C(42)C/T(21)C 
  CTGTG - TTTTC85G(40)A(40)A(51)A(51)A(56)A 
  TGGGA - AAATC212A(56)A(56)A(56)T(42)A(47)A 
Dm062740A6-40B2GCAAT - TCTGA304A(51)T(42)T(25)T(51)T(40)TTsp509I
Dm097541C1-41C6GCGTG - CGTGC140-143  CGTG(51)    
Dm349542A1-42A2CGGGG - CTTGT83G(56)T(37)G(35)G(51)G/T(17)TSimI
  CGAGA - GTCAG132T(42)C(35)T(20)C(16)C(19)CAatII TaiI
Dm260942A8-42A16TTTTT - AAATT77-78 T(40)A(40)T(56)A(56)T(56)T(56)T(56)A(23)  
Dm210642B4-42C2ACCGA - GCTAC114A(56)G(45)G(39)G(25)A(22)AAluI
  AGTTT - TAAGC140C(51)C(51)T(56)C(56)C(56)CMseI
  AGCAG - AGTCC148G(56)G(56)A(34)G(34)G(32)G 
  TGCGA - GGAGA160C(46)C(46)T(35)C(34)C(35)CBccI
  GCTTT - ACAGG176C(42)C(51)T(39)C(40)C(40)C 
Q 180543E9     Q1805Q1049  
Dm073543E12-43F2CCAAG - TGCGC74C(40)T(35)C(40)T(34)T(34)TAluI
  ATCTA - GACAT97C(42)T(42)C(400C(45)C(36)TPfl1108I
Dm074644B1GTATC - GTTCT140-145GCACGG(45) GCACGG(33)GCACGG(40)GCACGG(51)GCACGGBscGI
Dm220944D1-44D2CAATA - AAGTA128A(45)G(51)A(26)G/A(10)G(29)G 
  TATCA - AACAT155A(46)G(40)A(35)G/A(16)G(32)G 
Dm072244D5-44E2CACCG - TTACT G(27)TTT(20) G(32)TTC(14)G/*(11)TTC/T(11)  MspI PinAI
Dm384546B1-46B2TTTTT - AATAC159A(33)C(51)A(51) C(35)CDraI MseI
Dm034047D6-47E2GCGAA - TTTTA205T(28)A(32)T(37)T(40)T(40)T 
Dm008448C5-48D2CTCAT - CAGCT762T(56)T(51)T(56)C(35)T(49)T 
  TTATT - GAGAG772C(51)C(56)A(44)C(42)C(47)CTaqI
  TAAGT - ATTTC808A(51)G(51)G(40)G(40)G(40)ATsp509I
  TGAGA - GCCGA866C(51)C(51)C(40)C(42)T(40)C 
Q 104949D1-D3     Q1049Q1047  
Dm248050A3-50A4CCTAA - GACGT1032A(51)DEL(98)DEL(53)A(35)A(33)A 
  TATCC - ACAAC1060C(37)T(37)T(51)C(44)C(42)C 
Dm006450C23-50D1TTTAC - TTTCT119A(37)T(31)A(40)A(31)A(37)A 
  GCTAA - TTACT140G(33)A(29)G(40)A(40)A(40)GTsp509I
  TATTA - TACAT154T(40)A(30)T(43)A(35)A(42)TMseI VspI
  TTTTT - AAAAA164G(9)T(13)A(36)A(36)G(35)T(50)G(27)A(44)G(42)A(44)GTDraI MseI
Dm370951E10-51E11AGAAT - GAATC C(35)AG(35)AATAA(42)  C(31)AG(29)AATAA(35)C(35)AG(35)AATAA(37)CAGAATAA 
Dm078851E5-51E8AAAAA - CAACA1012C(40)T(51)T(33)C(26)C(42)C 
Dm266351E5-51E8TCATT - TTTTT156A(42)G(22)G(36)A(42)A(42)A 
Dm075452B1-52B2AATCA - ATATA916C(33)T(51)T(37)T(44)T(46)C 
Dm219254A2-54B1AAATG - TGGTT608T(56)G(56)T(42)G(37)G(51)T 
  ATTTC - GGAAT639G(51)C(42)G(32)G(48)G(51)GBspEI MspI
Dm242754C3-54C11TCGCT - CCTAC185T(42)A(46)T(36)T(45)T(40)T 
Dm349054E8-54F2AGTGT - TTTTT169T(44) T(56)T(56)T(46)A 
Dm085155A2-55B1GAGTT - CGAGT737G(43)A(33)A(35)A(40)A(17)A 
Dm172055A2-55B1ACTGG - GAAAA251G(56)A(48)G(35)G(27)G(14)G 
  TAAGT - TGCCA271C(40)C(45)C(21)G(35)G(38)C 
Dm263155A2-55B1TTTTA - TTGCG161T(46)T(51)T(20)G(56)G/T(11)T 
  TGCCA - CATCG179T(40)C(37)T(34)T(34)T/C(28)T 
Q 104757A3      Q1047  
Dm060256B1-56B2ATCCC - CCGGT80T(43)G(56)T(23) T(44)TAciI
  GGATT - CTC95A(37)G(47)A(35) A(33)A 
  CTC - TTCT99T(33)C(44)T(42) T(33)T 
  TTCT - GGCAG104T(56)G(48)T(42) T(35)T 
  GGTGT - TTCCG152A(56)G(56)A(50) A(40)A 
  CTGGG - CACCT178C(40)A(56)C(42) C(40)CHaeIII
  AGTTC - GTTTG221T(56)C(42)T(37) T(17)T 
Dm080056B1-56B2AAAA - TAAAA1298T(42)T(40)A(51) T(45)A 
  TTTAT - AAGTG1319T(31)A(42)T(45) T(33)TMseI
  CTAGG - AATAT A(29)TAC(25)A(43)TAC(17)T(40)TAA(51) A(12)TAC(24)TTAAMseI
  AATAT - ATATA1345G(32)C(32)G(51) G(29)G 
  ATAGT - GCAAC1364A(10)A(29)G(45) A(15)G 
Dm082457A4-57A6GAGCT - GGCGC64G(42)T(42)G(44) T(42)T 
  TATAT - CAGCT A(51)TT(42) A(51)TT(51)    
Dm006357E2-57E8TTAGC - TAAAC G(35)G(45)G(34)  G 
Dm227458A4CCCCC - TTTTC129-138TATTTTCCCG(51)GA********(42)AATTTTCTCG(56) GA********(30)TBscGI
Dm154458B10-58C4GGTGA - GGTAT99C/T(19)C(51)C(42) C/T(13)CBccI
  GTGGT - AACGA144A(33)A(56)G(56) G/A(17)A 
Dm163958F2-58F7TTCCA - CGGAT A(40)ATC(39)G(35)ATT(56)A(35)ATC(37) A(40)ATC(40)AATCBspEI MspI
  ATGAT - GGTTT175C(40)G(56)C(56) C(30)CDpnI Sau3AI BccI
Dm210159A1-59A3AGTAA - TAGAA690T(11)T(45)G(42) A(37)TTsp509I
  ACTTC - TTACT811A(40)G(51)T(42) G(42)  
  CAGCC - CTGGA858G(22)T(37)G(40) T(32)GAciI
Dm248759F2TATCT - ATACT49A(40)G(45)A(40) A(33)A 
  ATTCC - AACAA71A(46)A(45)G(51) A(30)G 
  AGGCA - GCGAT107T(51)C(39)T(42) T(42)TNlaIII SphI ThaI
  CAGAC - CCGCA173A(40)G(35)G(40) G(35)G 
  CAGCA - ACGGA182G(33)C(43)C(56) C(42)C 
Dm032760B2-60B10TATGTGTG - TGTGTGCT100-101T(39)A(39)DEL(98)DEL(98) DEL(98)TA