Projects

3rd Chromosome: Source Canton S vs Oregon R Click [HERE] to view Table Legend STS Cytological Location Flanking Sequence Nucleotide Position CSiso3 ORiso3 Dm2958 61B GGTCAATCGA-GTTGCTGCCT 170R A 51/- G 51/- Dm2467 61C TCTTTTTTTT-CCTGATTTTT 157InDel T 48/-   Dm0688 61D ACCGGAATTT-GGAGAGTTCC 132M C 56/56 A 51/48   61D GGACAAGAAT-TGGAATTAAG 186S C 56/- G 51/- Dm3857 61E GCAGATACTC-ATCCTAGCCT 272R G 51/51 A 42/42   61E CGACCTCGTA-GTGGCGTTCT 371R A 51/- G 36/- Dm0903 62A ACAGCGGACA-CGGACAACGG 140R A 40/19 G 40/17   62A CGGACAAGGC---GAATGGCAGG 158InDel   AAT 56/25   62A GTGAGGGAGA--CCAGA_TC_A 233InDel   AT 51/-   62A AGA__CCAGA-TC_AGAATCC 240W A 56/- T 48/-   62A __CCAGA_TC-AGAATCCAGA 243S G 51/- C 48/- Dm1545 62B AGGGTTCCGA-GGCAAGCGCA 86W T 34/38 A 26/35   62B TTCTCGCGGC-TCGATTAACT 119Y C 45/56 T 56/56   62B TTAGCAAAAC-CAGAGTGTGG 131R G 46/42 A 46/40   62B TGGCCGTCGT-GACCTGGATA 149K G 40/51 T 40/40   62B ATAAGAAACT-CATTAATACA 210Y C 40/56 T 35/47   62B TTAATACAAA-AATACACCCT 223W A 56/46 T 42/26 Dm2527 62E TGGTGGCACT-TTTAGAGGCG 138R A 56/- G 37/- Dm1756 62F ATACTAATGG-TGTGGGTGCC 12W T 46/- A 40/-   62F CCTGCCCCTT-AGAGCCTGAG 38Y T 45/- C 40/-   62F CGTAGCCACA-ACCACGACCT 80S G 35/- C 43/- Dm3834 62F TTAAACTAAA-TACAATAAAA 111W T 45/42 A 56/42 Dm2200 63D TCTCCGCCGC-TTCCC_CCCT 186Y T 45/- C 45/36   63D CCGC_TTCCC-CCCTCGGTGG 192R G 51/- A 45/13 Dm2349 63D TTGAATATTC-GAATAATAGT 116R G 56/56 A 45/56   63D AAGCCCTATT-AT_TATGGGA 146K T 56/25 G 51/-   63D CCCTATT_AT-TATGGGAAAT 149W A 56/29 T 51/8   63D TATATATGGG-AATTCAGCAA 156InDel   A 56/- Dm2185 63E GCAGACATCC-ACCAGACATT 160R G 37/35 A 40/- Dm2168 64C CTTCCCTCCC-TTCCCACTTC 185K G 40/32 T 56/4 Dm2086 64E COMPLEX       Dm3168 65A GGAATTTCTG-ACGAGGAGGA 204R G 40/- A 45/- Dm0258 65C CCCTTGTTGC-CTTATTATAT 186K G 35/32 T 45/46   65C TGGTGCTGCT-TGTGCCACAC 234K G 35/- T 45/- Dm2918 65E TTACTTCCTC-GGAGCGAATA 44S G 51/- C 42/- Dm0936 65F AAGAAATGGC-TCCGCCGATC 169R G 40/33 A 42/40   65F AATGTGCCGC-AATGCGATGC 202W A 42/- T 37/- Dm0925 66A TAAAACACAC-ATATACACAA 203W T 40/40 A 56/30   66A GAGACGTAAA-GTTACAATAT 241Y T 56/56 C 51/-   66A TGGAAAATAG-ATTCAATTAA 305W A 45/- T 45/- Dm0926 66A CTTACCATTA-GG_TTTTATG 90R G 34/51 A 32/51   66A ACCATTA_GG-TTTTATGTTT 93R G 48/45 A 48/56   66A GAACCGCATC-AGAATCCTGC 141K G 51/42 T 51/37   66A CCTTCAGCTA-CCGGCATCCT 194R G G 39/34 A 40/35 Dm0927 66A CACATAAATC-TCAGCGAAGA 63S C -/40 G 9/37   66A CGAAGAAAGA--------GAAAGAGAGA 78InDel CAGAGAGA 29/56     66A GCATGGACCG--AAAAAGAACC 161InDel AA 51/27   Dm2716 66A CATCCACGGT-ATCCTGCGGC 135R A 27/- G 56/-   66A CGGAGTCCGC-AGTCCGGAAA 180M C 25/- A 40/- Dm0913 66B AGGAGCATTG------CCACGACGGA 271InDel ACTTTG 45/21   Dm0929 67A CAAACTAATG-GTTT_GTGGT 63Y C 16/56 T 8/56   67A TAATG_GTTT-GTGGTACGAA 68W T 5/42 A 6/40 Dm0930 67A ACAATAGGAT-AGATTA_AAA 82R A 35/51 G 56/42   67A GAT_AGATTA-AAAAGGATTT 89Y C 40/44 T 40/56   67A ATAATTTTCT-AT___AGTTA 125Y T 51/56 C 56/44   67A ATTTTCT_AT---AGTTATATAA 128InDel TAT 43/37     67A AAGCGTATTT-AATTAT_CAT 150S G 56/40 C 56/56   67A TTT_AATTAT-CATATCAACT 157W A 40/56 T 46/51   67A AGCATATATT-ACGTATTTTT 188W T 45/56 A 39/46   67A AGCAGGGCCT-CTTTATAGAT 223W A 40/- T 56/- Dm4015 67A GTAACTGAAA-TGCTAGTTGC 56R A 56/56 G 56/43   67A CTCAAATTTC-ATATCTTGAA 90R G 42/40 A 51/56   67A TGGCACTCTT-AAGACTCCCA 122K T 44/45 G 50/42   67A CCATCCCTAA-CAATCGATTG 140S C 40/37 G 56/29   67A GGTTAGCTGC-TGCCATCTCT 164W A 40/35 T 35/24 Dm0482 67B GGTAACAAGG-AATATGATAT 164M A 56/24 C 56/-   67B TATAAATTAG-AAATTCAATA 182R G 45/27 A 45/- Dm0513 67B GGTGGTCCTG-GGAACGCCCA 109S G 51/56 C 51/40   67B CGGCGGAGAG-GAGCGGACGG 202M A 56/6 C 40/- Dm0947 67B AATGCGATAA-CAAGTACG_A 236S C 28/- G 40/42   67B A_CAAGTACG-ACATACA___ 245S C 42/- G 39/42   67B CG_ACATACA---ATGTACATAC 252InDel TACATATGT 51/-     67B TCCGCCCCAT-ACTACAATGG 368W A 40/- T 51/- Dm4030 67B CAGACAGAGA-AGCGATAGCT 133K G 34/29 T 21/30 Dm4039 67B CGGCGTCGCT-GCAAAGCCCG 795R A 29/14 G 45/42   67B GCCCGCCAAT-ACTTACCGAA 811InDel   A 51/16   67B TGAATACCCC-GGATCGGATT 849R A 35/22 G 56/11 Dm0963 67C CCGTTGAAGT-CGGCACTTAC 81R G 56/37 A 42/40 Dm2202 67C AAGAACATTT-CCGAATGTAA 93R A 40/- G 42/- Dm3377 67D ATTCGGCCTG-GTCAG_GGCT 169R A 51/- G 56/-   67D CCTG_GTCAG-GGCTTGCCAT 175K G 51/- T 45/- Dm3500 67D ATGCTAGAGT-CGAGACCTTA 143R A 45/33 G 40/39   67D ATGAGGACAT-GAACAGGAAA 185Y C 44/- T 56/- Dm0417 67E CCAAAAAAAA-TATGACAGAT 194InDel A 31/-   Dm3873 67F AAGACAAAAG------A_ATATA_TA 130InDel   ATATAT 42/15   67F AAG______A-ATATA_TATA 137Y C 35/42 T 22/44   67F ___A_ATATA-TATATATATA 143InDel   C 42/15   67F ATGTACCCAG-CACATAAGAG 247M A 56/- C 51/-   67F GAACAGTTGC-GACCCGGCTT 267R A 40/- G 40/- Dm0973 68A CCGCCTACTT-TGCGTCGTGT 216Y T 40/- C 40/- Dm2335 68A GGAGCCGGAA-TCAAGCGATC 185S C 40/- G 56/- Dm3724 69D GTCGTCGGCT-GGACGAAGGT 158Y T 29/40 C 39/42   69D GTGCGTTTGG-GCTACCGACG 236R G 33/- A 38/- Dm3681 70A ATAAGTTGGC-GGCAGAGGA_ 208W T 40/- A 45/-   70A _GGCAGAGGA-GTGATGGATT 218W T 56/- A 56/- Dm0129 70C GAGTGATGCA-GCCTCCTTGT 160S C 40/35 G 51/40   70C CCGGACAAAA-CAGCCTTCGT 196R A 51/27 G 56/35 Dm1667 70C GCTGGTAAAA-AATCAATATG 77R G -/56 A -/56   70C AGAGGCAATC-TCATAGAACT 283M C 51/32 A 51/30 Dm2052 70C TAACCGAAAA-GCGAGATTAA 170W A 56/11 A 56/56   70C AGAGCAAGCA--GAAAATGGAGA 258KK TT 51/- GG 56/-   70C AAGTGACCGA-AGATACATAG 279R G 45/- A 51/- Dm2920 70C AGCATTTGAC-TATTAATTCC 37W A 21/51 T 8/40 Dm3580 70C ATCTTAATCT-ATCATAACTA 61Y C 20/42 T -/46   70C GATATCGAAC-TTTC_TGTTC 92Y T 56/56 C 40/44   70C CGAAC_TTTC-TGTT_AGCCT 97K G 40/42 T 40/38   70C TTTTC_TGTT-AGCCT_ATTC 102Y C 16/42 T 10/51   70C TGTT_AGCCT-ATTCCCAAGA 108Y T 42/44 C 40/44   70C AATTGGCGCC-GAACATGGCC 180Y T 45/- C 37/- Dm1775 70D TAAATTTAAT----TTATAAC_CT_ 1408InDel   ACAT 30/-   70D ___TTATAAC-CT_AAACTAT 1419M C 40/46 A 37/24   70D TTATAAC_CT-AAACTATAAA 1422Y C 44/17 T 40/10   70D AGTACACAAC-CCTATACGTT 1465R A 44/- G 40/- Dm1641 71A TATTGACCAG-GTCCAGATTC 169Y T 35/- C 37/- Dm3025 71A TGTTGTTCGA-GAGTTATCTG 43K G 18/46 T 25/39   71A TAATTGAAGG-CCGCCGGTTC 103Y T 56/25 C 56/40   71A TCACAGAAAG----ATATATATCT 131RWMY AAAT 56/- GTCC 56/-   71A ATATAAGTTA-AAGCATTCAC 158W A 56/- T 51/- Dm0184 71B ACTTCCCCCC-CCCAGCCTAT 118W T 56/- A 35/40   71B CCCAGCCTAT-TACTCTGTGT 129W T 56/- A 56/4 Dm1800 72D TAATAAACTA-ATAAGCGATA 72W A 31/- T 33/-   72D AACTCTTAAC-----ATTTGT_AA_ 95InDel   ATGAA 28/-   72D ____ATTTGT-AA__CATTAC 106K T 45/- G 40/-   72D _ATTTGT_AA--CATTACAAT_ 109WY AT 56/- TC 40/-   72D __CATTACAAT-TGGAAAGATA 120K G 56/- T (98)/-   72D AAAGATATTT-G_GT____AG 134R A 45/- G 40/-   72D AGATATTT_G-GT____AGTA 136M A 45/- G 40/-   72D TATTT_G_GT----AGTACTTTTA 139InDel   TGGG 40/-   72D ATATGTACTT-ACGTATCTAT 175S C 42/- G 45/- Dm0547 73B GTGAGAGCAA-GTTAGGGCGA 883W A 33/42 T 40/24 Dm2039 74A ATATGGTGTA-GATCGTCACA 266S C 37/- G 45/- Dm2140 74A GAACAATTTA-TGAATAGGGA 64M C 36/22 A 51/18   74A ACAAAAAGGT-AACTATTTCA 174R G 46/- A 42/- Dm0632 74B TCGGTTCTCC-TACCTTCCCG 90Y T -/27 C -/40   74B CATTCCCATT-CCATCTCCTC 136Y T 29/19 C 39/56   74B TACAGTGGAT-CCGGTTAACG 294R A 45/- G 45/- Dm1836 75A TCTTTAGGTC-TGTTTCCGGT 194Y C 40/29 T 46/26 Dm1837 75A TGGGAACCAA-GCCCTCAGCG 96Y C -/35 T -/33   75A TCTTCATCTG-CGTGTCCGCT 123Y T -/35 C -/26   75A AGATCCTTGT-CGCGAACGCC 240M C 40/- A 40/- Dm3626 75A TGGCGATGGG-GGTGGTTTAA 217W T 51/- A 22/- Dm0984 75F AGCGGCGGAG-CCGCTATTAA 166Y C 56/46 T 51/10 Dm0970 76B TAGGCATTTG-ATAAAATGCT 974M C 51/- A 51/- Dm2817 76C ATTCCGTGCG-TGCTGTGGAC 102Y C 32/35 T 40/40 Dm4009 77A TTGCTCATTA-CGATGCTTGC 32Y T 17/- C 23/-   77A TTGTTTACAT-GTGTCCAGTA 166M C 25/- A 30/-   77A GTCCAGTAGT----GGTTATGTTT 179InDel TG** 30/- AGTA 42/- Dm0980 77E ATTGTCTAAA-CGATATGCTA 124S G 48/37 C 42/44 Dm3082 78E GTAGCAAGCC-GATCTGGACC 219S G 40/- C 30/- Dm2753 79E AATTAACCCT-TCGCAGTCTT 44InDel   C -/38   79E CAGAAAGTAT-CAACTGCAAC 113R A 56/31 G 40/33 Dm2182 83C ATGCCATTGG-AAACAGTCGG 67W A 40/7 T 32/21   83C CAGGTGAGTT-CACTGCCTTC 115Y T 44/21 C 11/30 Dm0077 84A AGTTCAAAAA-TTTGAAAACT 58K G 48/- T 56/- Dm1875 84A CTGGGATTCT-CGGATGACTG 22Y T 51/- C 40/-   84A GTTTTTTTTT-GCTAGTCGCC 156InDel T 25/-   Dm3390 84D AGGAGTGGCC-TGCATCTCGC 75R G 37/40 A 35/44   84D CGGCGTCGCG-CACGTACCAT 175InDel   G 40/-   84D ATAGGCATCT-GAGCAGGGAC 194R A 51/- G 56/- Dm3347 84E CCGAGGGATA-CGGCCGTTTG 191K T 40/- G 45/15 Dm1000 84F ATCAAGTGTC-AATAGTATGG 108M A 56/40 T 30/51   84F TTACGCAAGT-TTGCCGATCA 152Y C 56/35 T 56/10   84F ACTAGGTTGT-ATAGAATTTA 213W A 45/- T 56/- Dm2752 85A TGTGCTCGCT-AAGATGGAAA 152K G 40/40 T 45/42 Dm1582 85B ACTTGTATCG-CTTGCTATGT 192Y C 37/- T 45/- Dm1568 86A ACAAGAACTC-TCCACATTGA 141M A 46/40 C 56/56 Dm1569 86A TCGGATTGTT-CACATTTTGT 225R G 46/- A 51/- Dm1922 86C CGAGGGGTGG-GTTCCATCTT 1096Y C 35/56 T 45/43 Dm2758 86C CGTTGTGTGC-TGGTCTTT_A 186R G 37/35 A 51/19   86C C_TGGTCTTT-ACAGGCTTAA 195Y T 48/33 C 56/7   86C TAGGCTGCAC-CGTCGCTGTG 237R A 27/- G 40/- Dm2915 86C CCCGGCCGAT-AAGCTGACAG 193InDel T 51/-   Dm3564 86C TGGGAAATGT-TGAGAATGAA 147R A 51/19 G 51/29 Dm3727 86C ACGCTAGTTT-GTTTGTTTTA 64Y C 9/56 T 9/51   86C ATTCTGATTC-T_AAATTAAT 109K T 42/51 G 51/40   86C TCTGATTC_T-AAATTAATCC 111W A 42/51 T 51/45 Dm3322 86D CAACGAATAA-TTCATAATCA 32S G 51/- C 34/-   86D AAAAATGACA-TTGATAGTGG 57W A -/42 T -/42   86D TGAACGAGGG-GACGGAGAGT 192R A 40/36 G 40/40 Dm3328 86D CTTTTTCGTT-GCCTTGATTT 42Y C 18/- T 27/- Dm1774 87C ATCAAAGCGT-ACTG_TTTAA 68W A 40/- T 44/42   87C AGCGT_ACTG-TTTAATCATC 73R G 45/- A 56/42   87C CGCATGATAA-AGTGCTAATT 93W A 51/- T 56/38   87C ATATAAAAGA-ATT_TTTTTT 140Y C 46/- T 56/27   87C AAAAGA_ATT-TTTTTTATTT 144M A 45/- C 56/8   87C AGGCTGGGAG-CGC_GCTGA_ 202R G 40/- A 45/-   87C TGGGAG_CGC-GCTGA_GGGG 206K T 40/- G 40/-   87C _CGC_GCTGA-GGGGAGTAGG 212S G 51/- C 40/- Dm3326 87F AGTCAGCTGG-AAATAGGAAA 870InDel   ACATGAACTTATTCAGCAACG -/35 Dm3401 87F GAGCCAAGTG-TTGGGTGCTG 172Y C 51/10 T 51/32 Dm0038 88B GTATGTTTCT-TTTTTATATT 152W A 40/37 T 56/56 Dm1791 88D CCAAACAGTC-CCC_CCCCC_ 103InDel   C 48/- Dm2956 89A TTCAGAGTGT-AT_ATACAAT 183R G 51/- A 51/-   89A AGAGTGT_AT-ATACAATTTC 186R A 56/- G 56/- Dm1521 89B GCTTCGATGT-GGCGCCATGA 33M C -/40 A -/40   89B TTCTCGCGGC-TCGATTAACT 90M A 56/51 C 40/45 Dm2709 89D ATGAGCTGCT-TA_TCCATGA 50S C 19/33 G 46/21   89D AGCTGCT_TA-TCCATGAT_C 53Y C 37/42 T 39/9   89D A_TCCATGAT-CCGCG_CCCA 62W T 56/46 A 37/(16)   89D TGAT_CCGCG-CCCATTGCCG 68R G 35/35 A 37/(27)   89D CCATTGCCGA--GAATG_GA_G 80RM AA 51/44 GC 42/25   89D CGA__GAATG-GA___AGCGA 87M C 40/37 A 41/11   89D __GAATG_GA---AGCGA_GA_CA 90M CTC 35/38 AAG 56/13   89D GA___AGCGA-GA_CA_GT_T 98R A 11/48 G 32/9   89D __AGCGA_GA-CA_GT_TG_C 101R A 29/37 G 44/8   89D GCGA_GA_CA-GT_TG_CAGA 104S G 45/36 C 45/8   89D A_GA_CA_GT-TG_CAGAGTT 107K T 51/40 G 45/29   89D A_CA_GT_TG-CAGAGTTTCG 110Y C 45/33 T 45/15 Dm1654 89E GGAAGTCGCG-CACATTTTGC 245W T 39/13 A 35/32   89E TCGCTATCTG-TGAAGTTGGA 285Y T 45/- C 51/- Dm1763 90A GAGGCCTCGT-GACAAAGGGA 166Y T 46/37 C 27/37   90A CCGTACTTTT-CGCTTTCCAC 242Y C 42/42 T 37/40 Dm2494 90A ATCTATCGGG-TACTAATGGA 847M A 51/42 C 37/40   90A ATCTAATGCT-AGCTACAATA 902W A 51/29 T 51/19 Dm2629 91C CGTTTGCACC-TCACCCTGGC 107Y C 39/21 T 46/42 Dm0282 91F TTGAAAATAT-TACAATTAAT 114M C 43/46 A 56/48   91F TAAAGGTTGT--TAATTTTGCC 136Y TC 40/40 CT 56/37 Dm1709 91F TTATTTTCGC-GACTTAGGAG 287M C 40/- A 45/-   91F ACTTAGGAGC-CTTCCCTCGC 299S C 56/- G 35/- Dm0323 92B TCTCTTCCTG-TATATTATAA 80InDel GCGAA 40/31   Dm1680 92B ACTATAATAA-TC_AATAAGA 122Y C 45/- A 46/-   92B ATAATAA_TC-AATAAGAA_A 125K T 40/- G 42/-   92B C_AATAAGAA-AGGCACTTAA 134R A 56/- G 56/-   92B ATATGCCACT-TAAGACC___ 198W T 40/- A 45/-   92B CT_TAAGACC----CCTAA_TT_G 206InDel   ATCC 42/-   92B C____CCTAA-TT_GAT_GTA 215W T 56/- A 56/-   92B __CCTAA_TT-GAT_GTAATA 218K T 51/- G 56/-   92B TAA_TT_GAT-GTAATATAGT 222Y T 40/- C 45/- Dm2387 92B GCAAAAAGAA-CCCGGCTAGG 139S G 56/- C 51/40 Dm3710 92B GTTTACATAT-TATATGTATG 182K T 56/- G 27/-   92B ATGTACCCAG-CACATAAGAG 230M A 56/- C 51/-   92B GAACAGTTGC-GACCCGGCTT 250R A 40/- G 35/- Dm3293 92D GTCCATTGTG-GACCCTTTGC 133Y C 40/37 T 40/51   92D TGAGGACTGA-CTGCACAAAG 151S C 44/42 G 37/56   92D TCCTTGGAAT-AGAATCTTTC 222Y C 40/- T 45/- Dm2937 93F GTATATATAT--TTAAAATGCA 162InDel   AT 40/- Dm2730 94C CTGGCAAAAA-TCATTGTAGG 104Y C 27/37 T 32/9 Dm0869 94D ACATTTTATT----AATGC_TA__ 115InDel GCTT 40/- TGGA 56/-   94D T____AATGC-TA________ 124Y T 38/- C 56/-   94D __AATGC_TA---AG_____ATAG 127InDel   GAT 45/-   94D GC_TA___AG-----ATAGTTATTG 130InDel   TTTTC 51/-   94D GCAGTGCATA-ATTT_T____ 156W A 56/- T 56/-   94D GCATA_ATTT-T____TA___ 161InDel   A 51/-   94D ATA_ATTT_T----TA______CT 163InDel   GCAG 51/-   94D TT_T____TA------CTTTTTTTT_ 169InDel