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3rd Chromosome: Source Hoskins et al.
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STS Cytological
location		 Flanking
sequence		 Nucleotide
position		 Oregon R Canton S w;iso2;iso3 P strain 1
Q1028		 P strain 2 Release 1
y;cnbwsp		 RFLP?
Dm246761C1-61C2ATCTT - ACTGG219T(45)T(46)T(29)A(22) AMseI
  CTGTC - TTTTT235 T(48)T(27)T(30)   
Dm068861D1-61D2AATTT - GGAGA203A(51)C(56)AC A 
  AGAAT - TGGAA252G(51)C(56)GC G 
Q105062B4-62B5     Q1050Q1052  
Dm383562F1-62F2CAACA - GCTAA202G(40)G(42)G(42)A(44)A(42)G 
Dm220063D3GCCGC - TTCCC151C(45)T(45)C(29)T(30)T(42)C 
  TTCCC - CCCTC157A(45)G(51)A(44)G(42)G(37)GAciI
Dm208665A6-65A10TACGA - AAGCT35T(33)C(37)C(47)T(38)TT 
  TATTT - AAA85-86C(40)A(40)  C(15)A/C(11)CACA 
  AAA - TTTAA90-94TTT(51)AA(45)  TTT(24)AA(28)TTTAATTTAA 
  TTAAT - TTATA101-110ATATATTTAA(48)  ATATATTTAA(33)ATATATTTAAATATATTTAA 
  TTATA - GTATT116-128TATATAATATATA(56)  TATATAATATATA(28)TATATAATATATATATATAATATATA 
  ATTAA - GTATA136T(42)C(40)C(42)T(42)TTVspI TaiI
Dm092967A1-67A2TAATG - GTTT508T(56)C(56)C(42)C(18)C(42)C 
  GTTT - GTGGT513A(40)T(42)A(40)T(24)T(44)T 
Dm220267C10-67D1CATTT - CCGAA880G(42)A(40)G(40)A(37)A(35)G 
Q105268A1-68A2     Q1052Q1060  
Dm221568B1-68B2ATTCA - CTAAT G(40)TTC(38)G(42)TTC(38)T(56)TTT(40)G(35)TTC(28)G(42)TTC(40)GTTC 
  TTCCC - TATCC607T(42)T(37)A(42)T(42)T(46)T 
  TTCAC - AATA619A(45)A(37)G(30)A(42)A(42)A 
  ATAA - AAC624G(47)G(42)A(44)G(42)G(44)G 
  AAC - TTCAC628A(47)A(44)T(47)A(42)A(42)A 
  TCAAC - ATTTT641T(45)T(40)C(42)T(38)T(40)T 
  GTTTT - GTGGG753T(45)T(40)C(42)T(42)T(42)T 
Dm254469D1TACTT - CGCTG642G(27)G(40)G(40)A(51)A(40)GHhaI
Dm323971F1-71F2AGAGC - GAACT73C(40)C(37)T(35)T(35)C(40)TAluI
  GTGTG - GAGAT88G(46)G(51)A(30)A(42)G(40)G 
  AATTC - TCCTA114-132  AATTTTTAATGTTTCTAGG(33)AATTTTTAATGTTTCTAGG(37) AATTTTTAATGTTTCTAGGBfaI MseI Tsp509I
Dm180972C1-72D6AGGCG - AGGAT714C(40)C(39)A(19)ACCHhaI
Q106073A1-A4     Q1060Q1056  
Dm362674F4-75A2AGTGG - AAAGC1267A(30)A(56)G(56)A(33)A(56)A 
  ATGGG - GGTGG1301A(22)T(51)T(56)A(42)T(47)T 
Dm222076B6-76B10GCAAT - CCGAT124T(16)T(29)G(33)T(22)T(42)GTsp509I
Dm308976C3CGATG - TTTAT51  T(51)  T 
  AATAT - TA A(51)TG(51)A(45)TG(45)G(44)TA(44)A(40)TG(45)A(56)TG(56)GTA 
  TA - TATAT161-167TATGTAG(45)TATGTAG(45)CTACGTA(56)TATGTAG(42)TATGTAG(37)CTACGTA 
Q105683A7-A8     Q1056Q1058  
Dm156886A5TTGCA - CAAGA155A(51)A(38)C(27)A(33)A(30)A 
  AACTC - TCCAC165C(56)A(40)C(31)A(35)C(42)A 
Dm332687F13-88A1CTGGA - GAAAT71-91CATGAACTTATTCAGCAAC(37) CATGAACTTATTCAGCAAC(31)  CATGAACTTATTCAGCAAC(31)BspGI
  AAATA - CCCTA96-102GGAAATAA(42) GGAAATAA(37)  GGAAATAA(37) 
  CTATT - CTAAT139-144A(40)ACTTC(34)G(35)ACTTT(35)A(37)ACTTC(37)G(37)ACTTT(42)G(42)ACTTT(44)AACTTCMseI
Dm347888A1TCCGT - CAGCA90G(37)G(35)A(37)G(37)G(40)ACviRI RsaI
Dm033789C2-89C5TCCTG - TATAT856C(51)G(56)G(31)C(40)C(42)G 
Dm270989D2-89D4CAGGG - GATGA668A(15)G(56)A(42)A(48)A(44)A 
  GAGCT - TCCAT C(27)CTG(46)TAT(39)G(30)CTC(33)TAC(42)A(42)CTG(38)TAT(38)C(56)CTG(42)TAT(56)C(42)CTG(46)TAT(42)ACTGTATSacI
  ATGAT - CCGCG692A(37)T(56)A(34)A(42)A(35)A 
  CCGCG - CCCAT698A(37)G(35)A(30)A(37)A(31)AHaeIII SacII SimI
  GCCGA - GAATG710-711G(42)C(42)A(35)A(37)G(38)C(38)G(46)G(46)G(42)C(42)GC 
  GAATG - AGCGA A(34)GAA(56)A(56)G(56)C(27)GAC(35)T(27)C(27)A(42)GAA(46)A(42)G(44)A(42)GAA(56)A(56)G(51)A(42)GAA(56)A(56)G(46)A 
  AGCGA - CAGAG G(32)GAG(44)CAC(45)GTG(45)TGT(45)A(48)GAA(37)CAG(36)GTT(40)TGC(33)G(46)GAG(37)CAC(42)GTG(44)TGT(42)G(51)GAG(46)CAC(44)GTG(40)TGT(51)G(56)GAG(48)CAC(37)GTG(45)TGT(56)GGAGCACGTGTGTPmlI TaiI
Dm249489F4-90A2GGATG - CATCC503C(38)C(20)C(56)T(44)C(42)CBccI
  TCGGG - TACTA623C(37)A(51)C(39)A(40)C(35)C 
  GATTT - CAACT659G(45)G(45)G(42)C(29)G(35)GCviRI
  ATGCT - AGCTA678T(40)A(51)T(38)A(30)T(42)T 
Dm395290D1-90E2AATTC - TTTTT717T(27)T(30)T(44)    
Q105991A1-A2     Q1058Q1059  
Dm329392D1-91D2TTGTG - GACCC94T(40)C(40)C(35)C(42)T(42)C 
  CTGAG - ACTGA112G(56)C(42)C(38)C(42)G(35)C 
  GGAAT - AGAAT183T(40)C(45)C(35)C(35)T(33)CTsp509I
Dm170592D1-92D2GATAT - CCAAT473C(51)C(42)T(42)T(42)C(28)CEcoRV
  TCATA - AAG518C(33)C(28)A(42)A(33)C(28)C 
  AAG - CGGAT522C(42)C(56)A(37)A(44)C(42)C 
  TGCGG - AGATC617T(45)G(51)G(26)G(17)G(32)G 
Dm277294C1-94C5CATTT - GGCGG409C(45)C(40)T(40)T(42)C(42)C 
Dm169094E6-94E12AGTTT - GGATT802G(56)G(56)T(56)G(33)G(9)G 
  TAAAT - TGGAA872T(44)T(45)T(42)G(36)G(9)TTsp509I
  AACAT - TCTGA902-903A(44)T(48)A(51)T(51)A(40)T(45)T(42)A(42)T(9)A(9)TA 
  TCTTT - GCCTG916T(47)C(40)C(40)C(44)C/T(9)T 
  GCCTG - TTATT922T(46)A(45)A(45)A(40)T(9)T 
  TTATT - AAGTG940-950   TGTTCTTATTG(37)TGTTCTTATTG(11) MseI
  AGTGA - ATTGT957C(56)T(56)T(44)T(27)T(11)C 
  GTATT - TTCAA966C(56)C(56)C(56)T(42)T(20)C 
  AATAA - TTAGT996T(45)T(43)T(40)A(17)A(16)T 
  TTAGT - TATAT1002A(51)A(51)A(40)T(42)T(33)A 
  TATAT - TAAAC1008A(51)A(51)C(40)C(17)C(20)C 
Dm159295D1-95D6AGACA - TTCAC911C(56)T(44)T(31)C(56)C(56)C 
Dm066796E11-96F3TTTAA - ATTTC1032C(29)G(35)G(56)G(42)C(30)G 
  CTAGC - TTGAA1042C(51)T(56)T(46)T(37)C(35)TAluI
  GTCCG - CGA1081A(29)A/G(21)A(26)G(33)A(14)G 
  CGA - TTTAG1085-1100 GGTATGGCATTCTATG(56)GGTATGGCATTCTATG(48)GGTATGGCATTCTATG(42) GGTATGGCATTCTATG(48) 
  AAACT - TTTTT T(56)ATTG(37)G(56)ATTA(45)G(44)ATTA(45)G(37)ATTA(37)T(22)ATTG(15)GATTA 
  CAGAA - ATTGA1156A(56)T(51)T(30)T(29)A(40)TTsp509I SspI
  TTGGC - AAAAT1170C(42)A(51)A(44)A(44)C(26)AHaeIII MscI
  AAAAT - TATTT A(38)CG(40)G(56)CA(56)G(50)CA(37)G(30)CA(35)A(32)CA(21)GCASnaBI TaiI CviRI NsiI
Q105896F10-F11     Q1058Q1059  
Dm165797C1-97C3CATGG - CGCAT968C(37)C(40)A(30)C(36)C(24)CAciI HaeIII
  AGTTT - TGTTT1024G(56)T(56)G(56)G(37)G(37)T 
  GCCCC - CCATC1049G(40)A(40)A(40)A(37)G(40)AAciI
Dm247399D1-99D2GTCGC - GAATC1029 T(40)T(30)T(40)C(40)CNruI ThaI
  ATTGG - CCGGA C*(11)T(11)CAG(22)T(40)T(40)CAA(40)T(23)T(25)CAA(23)T(38)T(37)CAA(33)T(35)C(35)CAG(33)CTTCAADrdII
Dm2288100C1-100C4CTGCT - CATTT1040C(42)T(44)T(47)C(21)C(29)C 
  TTGGC - GTTCC  GTTT(31)GGT(37)GTTT(42)GGT(38)  ATTTGGTAciI
  CAAAG - TGCGT1139T(42)C(37)C(42)T(42)T(56)CAluI


This page last updated on: 6/6/01
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