X CHROMOSOME				

STS	Cytological	Flanking 	Nucleotide	Oregon R	Canton S	w;iso2;iso3	P strain 1	P strain 2	Release 1	RFLP?
	location	sequence	position				Q1028		y; cnbwsp	
Dm3513	1F1-1F3	TCACT - GGAAC	78	G(42)	C(42)	G(46)	G(51)		G	
		GGACA - CTCAA	90	G(42)	A(44)	G(35)	G(35)		G	AluI
		ACCCA - ACACT	144	C(42)	A(44)	C(56)	C(56)		C	
		ACAAA - ATGGG	174	A(47)	T(44)	A(40)	A(35)		A	
Dm1729	2B8-2B9	GAGCT - CTCGA	477	T(51)	C(56)	T(40)	T(42)		T	SacI
Dm0127	2F1-2F6	GTCGT - AGGGG	1447	C(37)AGT(40)	C(40)AGG(56)	C(30)AGT(42)	"(A/C,22)AGG(33)"		AAGG	
		CGCTC - CGCTC	1450	C(35)	T(42)	C(32)	C(35)		C	AciI BsrBI
Dm0106	3A6	TCTGT - GAACG	"122, 125"	G(37)TGA(37)	A(56)TGG(42)	G(45)TGA(34)	A(35)TGG(34)		ATGG	
Q1028	3D-E						Q1028	Q1034		
Dm3247	4C7-4C8	AGTTT - CTGCG	1607	T(42)	C(56)	C(24)	C/T(22)	C/T11)	T	
		CAGTC - GTGAA	1628	C(37)	G(37)	G(25)	G(28)	C/G(23)	C	
		GTGAA - ACGCC	1634	C(51)	T(44)	T(25)	C/T(19)	T/C(37)	C	
		GTTTT - CCGAA	1766	C(56)	T(56)	T(44)	T(42)	T(20)	C	
Dm1954	4E1	ACAAT - ATCGA	149	T(45)	A(56)	A(42)	T(56)	T(40)	T	Tsp509I
Dm3001	5C1-5C2	AATTC - GGATC	695	G(27)	G(35)	A(41)	G/A(22)	G(30)	G	
		TCCAA - ACTTT	704	T(37)	T(41)	G(50)	T(30)	T(33)	T	
		ATTTT - ACAAT	888	T(30)	C(56)	T(42)	C(34)	C(42)	C	
Q1034	6E 						Q1034	Q1030		
Dm2006	7A2-7A5	CCCAG - ACATG	582	T(56)	C(45)	T(30)	T/C(26)	T/C(17)	T	RsaI
		CCCCC - TCTTG	618	DEL(98)	C(40)	DEL(98)	DEL(98)	DEL(98)	DEL	
		TCTTG - C	624	C(37)	C(46)	C(31)	A/C(26)	A/C(33)	C	
		C - CAATC	626	G(40)	A(45)	G(20)	G(42)	G(42)	G	
		ACTCG - CCAGC	647	A(40)	A(35)	A(42)	A/T(30)	A/T(29)	A	TaqI BspGI
Dm1849	7D10-7D16	GGTT -TCCCT	180	A(30)	A(51)	T(28)	T(28)	T(28)	A	
Dm0426	8C1-8C2	CATAT - TA	1223	A(51)	A(51)	A(42)	G/A(24)	G/A(28)	A	
		TA - GTACA	1226-7	T(51)G(42)	T(51)G(42)	T(44)G(42)	"T/C(17), G/A(17)"	"T/C(18), G/A(18)"	TA	
		ACATA - GTACT	1234	T(56)	T(56)	T(48)	C/T(17)	C/T(11)	T	NdeI RsaI SnaBI
		TACTT - ATGTTG	1241	G(42)	A(51)	G(42)	A(40)	A(42)	A	MseI
		ACAAC - TACAA	1352	T(40)	T(40)	T(42)	A/T(23)	A/T(14)	T	
Dm3169	8D1-8D5	GCCGC - CACGA	1280	T(45)	T(40)	T(44)	C/T(13)	C/T(19)	T	BsrBI
		CCCGT - TGCTC	1373	G(37)	A(29)	G/A(37)	G/A(30)	G/A(39)	G	
Dm1980	9B1-9B2	GGTGA - TTCAC	35	A(48)	C(40)	C(40)	C(40)	C(40)	C	EcoRI Tsp509I
		ATCTA - CAAAA	62	A(51)	A(43)	T(40)	A(40)	A(45)	T	
		GCAAA - CATAA	"95, 98, 101"	A(51)TTA(51)AAG(56)	C(45)TTC(42)AAA(56)	C(35)TTC(40)AAA(40)	C(29)TTC(34)AAA(25)	C(29)TTC(27)AAA(27)	CTTCAAA	MseI Tsp509I
Q1030	10E						Q1030	Q1035		
Dm3746	10F7-10F8	TACAC - TCTCT	79-80	G(51)C(51)	A(51)A(51)	G(40)C(40)	A(45)A(46)	A(35)A(35)	AA 	
		TCACA - CCGTA	137	G(42)	T(43)	G(35)	T(44)	T(37)	T	
Dm2024	11B1-11B2	GAAC(A)9 - (A)5GAT	172	A(47)	C(44)	A	C(56)	C(42)	C	
Q1035	13E9						Q1035			
Dm0478	13A8-13A9	TGGCA - TTGGC	70	A(40)	A(51)	G(35)	A(39)		A	MunI Tsp509I
		AGACT - TAGTT	145	A(45)	A(45)	C(35)	A(37)		A	BfaI
Dm3491	13D1-E4	CATTG - CCGCC	60	T(46)	T(46)	C(46)	T(39)		T	EciI
		CACTG - ACGAG	170	A(56)	G(40)	A(35)	A(35)		A	BspGI
Dm1911	14B3-14B4	TGAAT - GAATG	1134	A(46)C(42)	A(40)C(37)	G(43)T(40)	G(21)T/C(21)		GT	
Dm3790	15B1-15B2	TGTGC - CTTAA	106	C(44)	A(45)	A(37)	C(50)		C	ApaLI CviRI
		ACTAT - CGCCT	221	C(40)	T(40)	T(40)	T(45)		T	AciI EciI
Dm0509	16F5-16F8	GAGGG - CCGCT	58	G(37)	T(45)	G(37)	T(40)		T	HaeIII SimI
Q1035	17C									
Dm1846	17A1-17A2	ATTTC - ACTTG	2150	A(37)	C(45)	A(42)	A(46)		C	
Dm2754	17B5-17C4	AGTAG - GTATG	402	C(35)	C(38)	C(56)	T(34)		C	
		CATTT - CAGCG	423	C(33)	T(42)	C(40)	T(22)		C	
		TGCGG - TTCTC	444	G(42)	T(38)	G(40)	T/G(34)		GT	
		CAAAA - ACCGG	465	A(34)	A(34)	T(56)	T(26)		T	
		CCGTT - GCTAA	512	T(27)	T(35)	T(40)	C(51)		C	
Dm0505	19E1-19E3	GCTGC - TGGCT	90	A(42)	A(42)	A(30)	A(30)		A	CviRI NlaIII
		CGGAG - ATATG	170	C(44)	T(56)	C(56)	C(37)		C	NdeI  
		ATATA - TATTG	190	A(56)	A(42)	A(42)	A(42)		A	
Dm0529	20B1-20B2	GGCTC - GTGTC	837	G(45)	T(40)	T(42)	G(56)		G