Collapsed in situ vocabulary Tomancak et. al. 2007 Format: Stage, Collapsed-Term (stage)CV-Term ------------- 1-3,Mat (1-3)maternal (1-3)strong ubiquitous (1-3)ubiquitous 4-6,Mat (4-6)apically cleared (4-6)maternal (4-6)rapidly degraded 4-6,Ubiq (4-6)strong ubiquitous (4-6)ubiquitous 7-8,Ubiq (7-8)strong ubiquitous (7-8)ubiquitous 9-10,Ubiq (9-10)strong ubiquitous (9-10)ubiquitous 11-12,Ubiq (11-12)strong ubiquitous (11-12)ubiquitous 13-16,Ubiq (13-16)strong ubiquitous (13-16)ubiquitous 4-6,Segmental (4-6)pair rule (4-6)segment polarity (4-6)segmentally repeated 7-8,Segmental (7-8)pair_rule (7-8)segment_polarity (7-8)segmentally repeated 9-10,Segmental (9-10)pair_rule (9-10)segment_polarity (9-10)segmentally repeated 11-12,Segmental (11-12)segmentally repeated 13-16,Segmental (13-16)segmentally repeated 4-6,gap (4-6)ant (4-6)gap (4-6)middle (4-6)post 7-8,gap (7-8)ant (7-8)gap (7-8)middle (7-8)post 9-10,gap (9-10)ant (9-10)gap (9-10)middle (9-10)post 4-6,EctAISN (4-6)ectoderm AISN 4-6,ProcephEct (4-6)head epidermis dors AISN (4-6)procephalic ectoderm AISN 7-8,ProcephEct (7-8)head epidermis dors A (7-8)head epidermis lateral A (7-8)procephalic ectoderm A 9-10,ProcephEct (9-10)head epidermis dors PR (9-10)head epidermis lateral PR (9-10)head epidermis vent (9-10)procephalic ectoderm PR 4-6,VisualPr (4-6)visual AISN 7-8,VisualPr (7-8)visual A 9-10,VisualPr (9-10)visual PR 4-6,AntennalPr (4-6)antennal PR AISN 7-8,AntennalPr (7-8)antennal PR A 9-10,AntennalPr (9-10)antennal PR2 4-6,CentBrain (4-6)central brain AISN 7-8,CentBrain (7-8)central brain A 9-10,CentBrain (9-10)central brain PR P3 11-12,CentBrain (11-12)brain PR (11-12)mushroom body PR (11-12)neuroblasts of central brain (11-12)pars intercerebralis PR (11-12)procephalic glioblasts (11-12)procephalic neuroblasts (11-12)procephalon PR 13-16,CentBrain (13-16)brain (13-16)central brain glia (13-16)central brain mushroom body (13-16)central brain neuron (13-16)central brain pars intercerebralis (13-16)central brain surface glia (13-16)neuroblasts of central brain (13-16)procephalon 11-12,OpLobe (11-12)inner optic lobe PR (11-12)optic lobe PR (11-12)outer optic lobe PR 13-16,OpLobe (13-16)inner optic lobe (13-16)optic lobe (13-16)outer optic lobe 7-8,VentCord (7-8)vent nerve cord A 9-10,VentCord (9-10)vent nerve cord PR P3 11-12,VentCord (11-12)glioblasts of vent nervous sys (11-12)neuroblasts of vent nervous sys (11-12)vent nerve cord PR 13-16,VentCord (13-16)lateral cord glia (13-16)lateral cord neuron (13-16)lateral cord surface glia (13-16)neuroblasts of vent nervous sys (13-16)vent nerve cord 4-6,Midline (4-6)mesectoderm A (4-6)mesectoderm AISN 7-8,Midline (7-8)mesectoderm PR 9-10,Midline (9-10)mesectoderm PR 11-12,Midline (11-12)midline PR (11-12)vent midline glioblast (11-12)vent midline neuroblast 13-16,Midline (13-16)vent midline (13-16)vent midline glia (13-16)vent midline neuron 11-12,PNS_Chemo (11-12)antennal PR1 (11-12)hypopharyngeal sense organ PR (11-12)labial sensory complex PR (11-12)labral sensory complex PR (11-12)maxillary sensory complex PR 13-16,PNS_Chemo (13-16)antennal sense organ (13-16)hypopharyngeal sense organ (13-16)labial sensory complex (13-16)labral sensory complex (13-16)maxillary sensory complex (13-16)sensory sys head 11-12,PNS_Photo (11-12)(larval eye PR) 13-16,PNS_Photo (13-16)Bolwig's organ 11-12,PNS_Mechano (11-12)dors/lateral sensory complexes PR (11-12)vent sensory complex SA 13-16,PNS_Mechano (13-16)dors/lateral sensory complexes (13-16)vent sensory complex PR 7-8,SNS (7-8)stomatogastric nervous sys A 9-10,SNS (9-10)stomatogastric nervous sys PR 11-12,SNS (11-12)esophageal ganglion PR (11-12)frontal ganglion PR (11-12)hypocerebral ganglion PR (11-12)proventricular ganglion PR (11-12)stomatogastric nervous sys PR 13-16,SNS (13-16)esophageal ganglion (13-16)frontal ganglion (13-16)hypocerebral ganglion (13-16)proventricular ganglion (13-16)stomatogastric nervous sys 4-6,DorsEct (4-6)dors ectoderm A (4-6)dors ectoderm AISN 7-8,DorsEct (7-8)dors ectoderm PR 9-10,DorsEct (9-10)dors ectoderm PR (9-10)dors epidermis A (9-10)dors ridge A (9-10)gnathal lobes A 4-6,VentEct (4-6)vent ectoderm A (4-6)vent ectoderm AISN 7-8,VentEct (7-8)vent ectoderm PR (7-8)vent epidermis PR 9-10,VentEct (9-10)vent ectoderm PR (9-10)vent epidermis PR 13-16,AdultImagPr (13-16)adult eye PR (13-16)dors imaginal precursor (13-16)vent imaginal precursor 11-12,AdultImagPr (11-12)adult eye PR P1 (11-12)dors imaginal precursor SA (11-12)vent imaginal precursor SA 11-12,HeadEpi (11-12)head epidermis PR P1 (11-12)head epidermis dors PR P1 (11-12)head epidermis lateral PR P1 (11-12)head epidermis vent P1 13-16,HeadEpi (13-16)head epidermis (13-16)head epidermis dors (13-16)head epidermis lateral (13-16)head epidermis vent 11-12,Atrium (11-12)atrium PR 13-16,Atrium (13-16)atrium 11-12,DorsEctEpi (11-12)abdominal histoblast SA (11-12)dors apodeme SA (11-12)dors epidermis PR (11-12)dors ridge PR P1 (11-12)leading edge cell SA 13-16,DorsEctEpi (13-16)dors apodeme (13-16)dors epidermis (13-16)dors histoblast nest abdominal (13-16)dors ridge (13-16)leading edge cell 11-12,VentEctEpi (11-12)vent apodeme SA (11-12)vent epidermis PR 13-16,VentEctEpi (13-16)vent apodeme (13-16)vent epidermis 11-12,AnalPad (11-12)anal pad SA 13-16,AnalPad (13-16)anal pad 9-10,Trach (9-10)tracheal sys A 11-12,Trach (11-12)adult tracheal precursor SA (11-12)ant spiracle SA (11-12)dors trunk SA (11-12)fusion cells PR (11-12)imaginal tracheal precursors A (11-12)primary segmental branch SA (11-12)tracheal PR (11-12)tracheole SA (11-12)visceral branch SA 13-16,Trach (13-16) ant spiracle (13-16) dors branch (13-16) dors trunk (13-16) tracheal sys (13-16) visceral branch (13-16)fusion cells (13-16)imaginal tracheal precursor (13-16)imaginal tracheal precursors (13-16)tracheole 11-12,PostSpir (11-12)post spiracle SA 13-16,PostSpir (13-16) post spiracle 11-12,Oenocyte (11-12)oenocyte SA 13-16,Oenocyte (13-16) oenocyte 4-6,FoGut (4-6)foregut AISN 7-8,FoGut (7-8)esophagus A (7-8)foregut A (7-8)proventriculus A 9-10,FoGut (9-10)esophagus PR (9-10)foregut PR (9-10)proventriculus PR 11-12,FoGut (11-12)adult foregut precursor A (11-12)esophagus PR P1 (11-12)foregut PR (11-12)proventriculus PR (11-12)proventriculus inner layer PR (11-12)proventriculus intermediate layer PR 13-16,FoGut (13-16)adult foregut precursor (13-16)esophagus (13-16)foregut (13-16)proventriculus (13-16)proventriculus inner layer (13-16)proventriculus intermediate layer 4-6,Phar (4-6)clypeolabrum AISN (4-6)hypopharynx AISN 7-8,Phar (7-8)clypeolabrum A (7-8)hypopharynx A 9-10,Phar (9-10)clypeolabrum PR (9-10)hypopharynx PR 11-12,Phar (11-12)adult clypeolabrum A (11-12)clypeo-labral PR (11-12)epipharynx PR P1 (11-12)hypopharynx PR P1 13-16,Phar (13-16)adult clypeo-labral PR (13-16)clypeolabrum (13-16)epipharynx (13-16)hypopharynx 9-10,SalGl (9-10)salivary gland A (9-10)salivary gland body SA (9-10)salivary gland duct SA 11-12,SalGl (11-12)adult salivary A (11-12)salivary common duct PR (11-12)salivary duct PR (11-12)salivary gland PR (11-12)salivary gland body PR 13-16,SalGl (13-16)adult salivary PR (13-16)salivary gland (13-16)salivary gland body (13-16)salivary gland common duct (13-16)salivary gland duct 4-6,HiGut (4-6)hindgut AISN 7-8,HiGut (7-8)hindgut A 9-10,HiGut (9-10)hindgut proper A (9-10)inclusive hindgut PR 11-12,HiGut (11-12)adult hindgut SA (11-12)hindgut proper PR (11-12)large intestine SA (11-12)rectum SA (11-12)small intestine SA 13-16,HiGut (13-16)adult hindgut precursor (13-16)hindgut (13-16)large intestine (13-16)rectum (13-16)small intestine 9-10,MalTub (9-10)(tip cells SA) (9-10)Malpighian tubule A (9-10)main segment of Malpighian tubule SA 11-12,MalTub (11-12)Malpighian tubule PR (11-12)Malpighian tubule main body PR (11-12)Malpighian tubule tip cell PR 13-16,MalTub (13-16)Malpighian tubule (13-16)Malpighian tubule tip cell (13-16)main segment of Malpighian tubule 4-6,AntEnd (4-6)ant endoderm AISN (4-6)endoderm AISN 7-8,AntEnd (7-8)ant endoderm A (7-8)ant endoderm ant A 9-10,AntEnd (9-10)ant endoderm PR (9-10)ant endoderm ant A 11-12,AntMidGut (11-12)ant adult midgut precursors PR (11-12)ant endoderm ant PR (11-12)ant midgut PR (11-12)gastric caecum PR 4-6,PostEnd (4-6)post endoderm A (4-6)post endoderm AISN 7-8,PostEnd (7-8)post endoderm PR 9-10,PostEnd (9-10)post endoderm PR 11-12,PostMidGut (11-12)cuprophilic cells PR (11-12)interstitial cells PR (11-12)post adult midgut precursors PR (11-12)post midgut PR 13-16,MidGut (13-16)adult midgut precursor (13-16)ant adult midgut precursors (13-16)cuprophilic cell (13-16)gastric caecum (13-16)midgut (13-16)midgut chamber (13-16)midgut interstitial cell (13-16)post adult midgut precursors (13-16)proventriculus outer layer 4-6,Meso (4-6)head mesoderm A (4-6)head mesoderm AISN (4-6)mesoderm AISN (4-6)trunk mesoderm A (4-6)trunk mesoderm AISN 7-8,TrunkMeso (7-8)trunk mesoderm PR 9-10,TrunkMeso (9-10)trunk mesoderm PR 11-12,TrunkMeso (11-12)trunk mesoderm PR 7-8,HeadMeso (7-8)head mesoderm PR 9-10,HeadMeso (9-10)head mesoderm PR 11-12,HeadMeso (11-12)head mesoderm PR 11-12,CardMeso (11-12)cardiac mesoderm PR (11-12)dors vessel SA (11-12)head vascular rudiment PR (11-12)lymph gland SA (11-12)pericardial cell SA 13-16,CardioVasc (13-16) circulatory sys (13-16) dors vessel (13-16) pericardial cell (13-16)lymph gland (13-16)procephalic vascular rudiment 9-10,Garland (9-10)garland cell PR 11-12,Garland (11-12)garland cell PR 13-16,Garland (13-16) garland cell 9-10,Plasmat (9-10)crystal cell SA (9-10)plasmatocytes PR 11-12,Plasmat (11-12)plasmatocytes A (11-12)procrystal cell 13-16,Plasmat (13-16)crystal cell (13-16)plasmatocytes 11-12,TrunkSomMusc (11-12)muscle sys PR (11-12)somatic muscle PR 13-16,TrunkSomMusc (13-16) muscle sys (13-16) somatic muscle (13-16)adult muscle precursor PR 11-12,TrunkViscMusc (11-12)circular visceral mesoderm PR (11-12)longitudinal visceral mesoderm PR (11-12)visceral muscle PR 13-16,TrunkViscMusc (13-16) visceral muscle (13-16)circular visceral muscle fibers (13-16)longitudinal visceral muscle fibers 9-10,HeadSomMusc (9-10)dors pharyngeal muscle PR 11-12,HeadSomMusc (11-12)dors pharyngeal muscle PR 13-16,HeadSomMusc (13-16)dors prothoracic pharyngeal muscle 9-10,HeadViscMusc (9-10)head visceral muscle PR 11-12,HeadViscMusc (11-12)head visceral muscle PR 13-16,HeadViscMusc (13-16)visceral muscle of esophagus 11-12,RingGland (11-12)corpus allatum PR (11-12)corpus cardiacum PR (11-12)ring gland PR 13-16,RingGland (13-16)corpus allatum (13-16)corpus cardiacum (13-16)prothoracic gland (13-16)ring gland 1-3,PoleCell (1-3)pole plasm 4-6,PoleCell (4-6)pole cell (4-6)pole plasm 7-8,PoleCell (7-8)pole cell 9-10,GermCell (9-10)germ cell 11-12,GermCell (11-12)germ cell 13-16,Gonad (13-16)germ cell (13-16)gonad (13-16)gonadal sheath 4-6,Amnio (4-6)amnioserosa AISN 7-8,Amnio (7-8)amnioserosa A 9-10,Amnio (9-10)amnioserosa PR 11-12,Amnio (11-12)amnioserosa 13-16,Amnio (13-16)amnioserosa (13-16)apoptotic amnioserosa 4-6,Yolk (4-6)yolk (4-6)yolk nuclei 7-8,Yolk (7-8)yolk nuclei 9-10,Yolk (9-10)yolk nuclei 11-12,Yolk (11-12)yolk nuclei 13-16,Yolk (13-16)yolk nuclei 11-12,FB (11-12)fat body/gonad PR 13-16,FB (13-16) fat body 9-10,CardMeso (9-10)head vascular rudiment PR