% -- ********************************************************* -- % -- Autogenerated Prolog factfiles % -- see http://www.blipkit.org for details % -- ********************************************************* -- metadata_db:entity_label('BILA:0000000', 'anatomical entity'). metadata_db:entity_resource('BILA:0000000', 'bila'). class('BILA:0000000'). metadata_db:entity_xref('BILA:0000000', 'CARO:0000000'). metadata_db:entity_label('BILA:0000003', 'anatomical structure'). metadata_db:entity_resource('BILA:0000003', 'bila'). class('BILA:0000003'). subclass('BILA:0000003', 'BILA:0000006'). def('BILA:0000003', 'Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism''s own genome.'). def_xref('BILA:0000003', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000003', 'CARO:0000003'). metadata_db:entity_label('BILA:0000004', 'portion of organism substance'). metadata_db:entity_resource('BILA:0000004', 'bila'). class('BILA:0000004'). subclass('BILA:0000004', 'BILA:0000006'). def('BILA:0000004', 'Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body.'). def_xref('BILA:0000004', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000004', 'CARO:0000004'). metadata_db:entity_label('BILA:0000005', 'anatomical space'). metadata_db:entity_resource('BILA:0000005', 'bila'). class('BILA:0000005'). subclass('BILA:0000005', 'BILA:0000007'). def('BILA:0000005', 'Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures.'). def_xref('BILA:0000005', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000005', 'CARO:0000005'). metadata_db:entity_label('BILA:0000006', 'material anatomical entity'). metadata_db:entity_resource('BILA:0000006', 'bila'). class('BILA:0000006'). subclass('BILA:0000006', 'BILA:0000000'). % anatomical entity def('BILA:0000006', 'Anatomical entity that has mass.'). def_xref('BILA:0000006', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000006', 'CARO:0000006'). metadata_db:entity_label('BILA:0000007', 'immaterial anatomical entity'). metadata_db:entity_resource('BILA:0000007', 'bila'). class('BILA:0000007'). subclass('BILA:0000007', 'BILA:0000000'). % anatomical entity def('BILA:0000007', 'Anatomical entity that has no mass.'). def_xref('BILA:0000007', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000007', 'CARO:0000007'). metadata_db:entity_label('BILA:0000008', 'anatomical line'). metadata_db:entity_resource('BILA:0000008', 'bila'). class('BILA:0000008'). subclass('BILA:0000008', 'BILA:0000007'). % immaterial anatomical entity def('BILA:0000008', 'Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface.'). def_xref('BILA:0000008', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000008', 'CARO:0000008'). metadata_db:entity_label('BILA:0000009', 'anatomical point'). metadata_db:entity_resource('BILA:0000009', 'bila'). class('BILA:0000009'). subclass('BILA:0000009', 'BILA:0000007'). % immaterial anatomical entity def('BILA:0000009', 'Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface.'). def_xref('BILA:0000009', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000009', 'CARO:0000009'). metadata_db:entity_label('BILA:0000010', 'anatomical surface'). metadata_db:entity_resource('BILA:0000010', 'bila'). class('BILA:0000010'). subclass('BILA:0000010', 'BILA:0000007'). % immaterial anatomical entity def('BILA:0000010', 'Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures.'). def_xref('BILA:0000010', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000010', 'CARO:0000010'). metadata_db:entity_label('BILA:0000011', 'anatomical system'). metadata_db:entity_resource('BILA:0000011', 'bila'). class('BILA:0000011'). subclass('BILA:0000011', 'BILA:0000054'). def('BILA:0000011', 'Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.'). def_xref('BILA:0000011', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000011', 'CARO:0000011'). metadata_db:entity_label('BILA:0000012', 'multi-cellular organism'). metadata_db:entity_resource('BILA:0000012', 'bila'). class('BILA:0000012'). subclass('BILA:0000012', 'BILA:0000003'). % anatomical structure def('BILA:0000012', 'Anatomical structure that is an individual member of a species and consists of more than one cell.'). def_xref('BILA:0000012', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000012', 'CARO:0000012'). metadata_db:entity_label('BILA:0000013', 'cell'). metadata_db:entity_resource('BILA:0000013', 'bila'). class('BILA:0000013'). subclass('BILA:0000013', 'BILA:0000003'). % anatomical structure def('BILA:0000013', 'Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.'). def_xref('BILA:0000013', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000013', 'CARO:0000013'). metadata_db:entity_label('BILA:0000014', 'cell component'). metadata_db:entity_resource('BILA:0000014', 'bila'). class('BILA:0000014'). subclass('BILA:0000014', 'BILA:0000003'). % anatomical structure restriction('BILA:0000014', 'OBO_REL:part_of', 'BILA:0000013'). % cell def('BILA:0000014', 'Anatomical structure that is a direct part of the cell.'). def_xref('BILA:0000014', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000014', 'CARO:0000014'). metadata_db:entity_label('BILA:0000015', 'excretory system'). metadata_db:entity_resource('BILA:0000015', 'bila'). class('BILA:0000015'). restriction('BILA:0000015', 'OBO_REL:part_of', 'BILA:0000122'). def('BILA:0000015', 'The excretory system is the system of an organism that mainly performs the function of excretion, the bodily process of discharging wastes. It is responsible for the elimination of wastes produced by the processes that maintain homeostasis.'). def_xref('BILA:0000015', '4DXp:TH'). metadata_db:entity_synonym('BILA:0000015', 'renal system'). metadata_db:entity_synonym_scope('BILA:0000015', 'renal system', 'exact'). metadata_db:entity_label('BILA:0000016', 'cardiovascular system'). metadata_db:entity_resource('BILA:0000016', 'bila'). class('BILA:0000016'). subclass('BILA:0000016', 'BILA:0000011'). % anatomical system metadata_db:entity_label('BILA:0000017', 'eye'). metadata_db:entity_resource('BILA:0000017', 'bila'). class('BILA:0000017'). subclass('BILA:0000017', 'BILA:0000140'). def('BILA:0000017', 'The minimum setting for an eye involves a photo-receptor in the vicinity of shading pigment, which allows the detection of the direction of light. A simple eye consists of one photoreceptor and one pigment cell. Such prototype two- celled eyes are found, for example, in trochophora larvae and in planarians. Our definition also includes single photosensitive cells containing both photo- and shading pigment (eg. unicellular algae, turbellarian ''epidermal eyes''), but excludes photoreceptor cells not combined with shading pigment (eg. deep brain photoreceptor cells).'). def_xref('BILA:0000017', 'PMID:11604122'). metadata_db:entity_label('BILA:0000018', 'appendage'). metadata_db:entity_resource('BILA:0000018', 'bila'). class('BILA:0000018'). subclass('BILA:0000018', 'BILA:0000032'). def('BILA:0000018', 'An appendage is an external body part, or natural prolongation, that protrudes from an organism''s body, such as a vertebrate''s limbs.'). def_xref('BILA:0000018', '4DXp:TH'). metadata_db:entity_label('BILA:0000019', 'compound organ component'). metadata_db:entity_resource('BILA:0000019', 'bila'). class('BILA:0000019'). subclass('BILA:0000019', 'BILA:0000055'). restriction('BILA:0000019', 'OBO_REL:part_of', 'BILA:0000024'). def('BILA:0000019', 'Multi-tissue structure that is part of a compound organ.'). def_xref('BILA:0000019', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000019', 'CARO:0000019'). metadata_db:entity_label('BILA:0000020', 'heart'). metadata_db:entity_resource('BILA:0000020', 'bila'). class('BILA:0000020'). restriction('BILA:0000020', 'OBO_REL:part_of', 'BILA:0000016'). % cardiovascular system metadata_db:entity_label('BILA:0000021', 'simple organ'). metadata_db:entity_resource('BILA:0000021', 'bila'). class('BILA:0000021'). subclass('BILA:0000021', 'BILA:0000055'). def('BILA:0000021', 'Multi-tissue structure that is not part of a compound organ.'). def_xref('BILA:0000021', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000021', 'CARO:0000021'). metadata_db:entity_label('BILA:0000024', 'compound organ'). metadata_db:entity_resource('BILA:0000024', 'bila'). class('BILA:0000024'). subclass('BILA:0000024', 'BILA:0000003'). % anatomical structure def('BILA:0000024', 'Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types.'). def_xref('BILA:0000024', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000024', 'CARO:0000024'). metadata_db:entity_label('BILA:0000027', 'male organism'). metadata_db:entity_resource('BILA:0000027', 'bila'). class('BILA:0000027'). subclass('BILA:0000027', 'BILA:0000048'). def('BILA:0000027', 'Gonochoristic organism that can produce male gametes.'). def_xref('BILA:0000027', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000027', 'CARO:0000027'). metadata_db:entity_label('BILA:0000028', 'female organism'). metadata_db:entity_resource('BILA:0000028', 'bila'). class('BILA:0000028'). subclass('BILA:0000028', 'BILA:0000048'). def('BILA:0000028', 'Gonochoristic organism that can produce female gametes.'). def_xref('BILA:0000028', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000028', 'CARO:0000028'). metadata_db:entity_label('BILA:0000029', 'hermaphroditic organism'). metadata_db:entity_resource('BILA:0000029', 'bila'). class('BILA:0000029'). subclass('BILA:0000029', 'BILA:0000012'). % multi-cellular organism def('BILA:0000029', 'Multi-cellular organism that can produce both male and female gametes.'). def_xref('BILA:0000029', 'CARO:MAH'). metadata_db:entity_synonym('BILA:0000029', 'dioecious organism'). metadata_db:entity_synonym_scope('BILA:0000029', 'dioecious organism', 'related'). metadata_db:entity_xref('BILA:0000029', 'CARO:0000029'). metadata_db:entity_label('BILA:0000030', 'asexual organism'). metadata_db:entity_resource('BILA:0000030', 'bila'). class('BILA:0000030'). subclass('BILA:0000030', 'BILA:0000012'). % multi-cellular organism def('BILA:0000030', 'Multi-cellular organism that does not produce gametes.'). def_xref('BILA:0000030', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000030', 'CARO:0000030'). metadata_db:entity_label('BILA:0000032', 'organism subdivision'). metadata_db:entity_resource('BILA:0000032', 'bila'). class('BILA:0000032'). subclass('BILA:0000032', 'BILA:0000003'). % anatomical structure def('BILA:0000032', 'Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism.'). def_xref('BILA:0000032', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000032', 'CARO:0000032'). metadata_db:entity_label('BILA:0000034', 'embryonic structure'). metadata_db:entity_resource('BILA:0000034', 'bila'). class('BILA:0000034'). subclass('BILA:0000034', 'BILA:0000003'). % anatomical structure metadata_db:entity_label('BILA:0000035', 'germ layer'). metadata_db:entity_resource('BILA:0000035', 'bila'). class('BILA:0000035'). subclass('BILA:0000035', 'BILA:0000034'). % embryonic structure metadata_db:entity_label('BILA:0000036', 'ectoderm'). metadata_db:entity_resource('BILA:0000036', 'bila'). class('BILA:0000036'). subclass('BILA:0000036', 'BILA:0000035'). % germ layer metadata_db:entity_label('BILA:0000037', 'mesoderm'). metadata_db:entity_resource('BILA:0000037', 'bila'). class('BILA:0000037'). subclass('BILA:0000037', 'BILA:0000035'). % germ layer metadata_db:entity_label('BILA:0000038', 'endoderm'). metadata_db:entity_resource('BILA:0000038', 'bila'). class('BILA:0000038'). subclass('BILA:0000038', 'BILA:0000035'). % germ layer metadata_db:entity_label('BILA:0000039', 'neuroectoderm'). metadata_db:entity_resource('BILA:0000039', 'bila'). class('BILA:0000039'). restriction('BILA:0000039', 'OBO_REL:part_of', 'BILA:0000036'). % ectoderm metadata_db:entity_label('BILA:0000040', 'acellular anatomical structure'). metadata_db:entity_resource('BILA:0000040', 'bila'). class('BILA:0000040'). subclass('BILA:0000040', 'BILA:0000003'). % anatomical structure def('BILA:0000040', 'Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue.'). def_xref('BILA:0000040', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000040', 'CARO:0000040'). metadata_db:entity_label('BILA:0000041', 'anatomical cluster'). metadata_db:entity_resource('BILA:0000041', 'bila'). class('BILA:0000041'). subclass('BILA:0000041', 'BILA:0000054'). def('BILA:0000041', 'Anatomical group that has its parts adjacent to one another.'). def_xref('BILA:0000041', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000041', 'CARO:0000041'). metadata_db:entity_label('BILA:0000042', 'extraembryonic structure'). metadata_db:entity_resource('BILA:0000042', 'bila'). class('BILA:0000042'). subclass('BILA:0000042', 'BILA:0000003'). % anatomical structure def('BILA:0000042', 'Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo.'). def_xref('BILA:0000042', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000042', 'CARO:0000042'). metadata_db:entity_label('BILA:0000043', 'portion of tissue'). metadata_db:entity_resource('BILA:0000043', 'bila'). class('BILA:0000043'). subclass('BILA:0000043', 'BILA:0000003'). % anatomical structure def('BILA:0000043', 'Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships.'). def_xref('BILA:0000043', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000043', 'CARO:0000043'). metadata_db:entity_label('BILA:0000044', 'visceral mesoderm'). metadata_db:entity_resource('BILA:0000044', 'bila'). class('BILA:0000044'). restriction('BILA:0000044', 'OBO_REL:part_of', 'BILA:0000037'). % mesoderm metadata_db:entity_label('BILA:0000045', 'sequential hermaphroditic organism'). metadata_db:entity_resource('BILA:0000045', 'bila'). class('BILA:0000045'). subclass('BILA:0000045', 'BILA:0000029'). % hermaphroditic organism def('BILA:0000045', 'Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex.'). def_xref('BILA:0000045', 'CARO:MAH'). metadata_db:entity_synonym('BILA:0000045', 'consecutive hermaphroditic organism'). metadata_db:entity_synonym_scope('BILA:0000045', 'consecutive hermaphroditic organism', 'related'). metadata_db:entity_xref('BILA:0000045', 'CARO:0000045'). metadata_db:entity_label('BILA:0000046', 'synchronous hermaphroditic organism'). metadata_db:entity_resource('BILA:0000046', 'bila'). class('BILA:0000046'). subclass('BILA:0000046', 'BILA:0000029'). % hermaphroditic organism def('BILA:0000046', 'Hermaphroditic organism that produces both male and female gametes at the same time.'). def_xref('BILA:0000046', 'CARO:MAH'). metadata_db:entity_synonym('BILA:0000046', 'serially hermaphroditic organism'). metadata_db:entity_synonym_scope('BILA:0000046', 'serially hermaphroditic organism', 'related'). metadata_db:entity_xref('BILA:0000046', 'CARO:0000046'). metadata_db:entity_label('BILA:0000047', 'somatic mesoderm'). metadata_db:entity_resource('BILA:0000047', 'bila'). class('BILA:0000047'). restriction('BILA:0000047', 'OBO_REL:part_of', 'BILA:0000037'). % mesoderm metadata_db:entity_label('BILA:0000048', 'gonochoristic organism'). metadata_db:entity_resource('BILA:0000048', 'bila'). class('BILA:0000048'). subclass('BILA:0000048', 'BILA:0000012'). % multi-cellular organism def('BILA:0000048', 'Multi-cellular organism that has male and female sexes.'). def_xref('BILA:0000048', 'CARO:MAH'). metadata_db:entity_synonym('BILA:0000048', 'monoecious organism'). metadata_db:entity_synonym_scope('BILA:0000048', 'monoecious organism', 'related'). metadata_db:entity_xref('BILA:0000048', 'CARO:0000048'). metadata_db:entity_label('BILA:0000049', 'protandrous hermaphroditic organism'). metadata_db:entity_resource('BILA:0000049', 'bila'). class('BILA:0000049'). subclass('BILA:0000049', 'BILA:0000045'). % sequential hermaphroditic organism def('BILA:0000049', 'Sequential hermaphroditic organism that producesngametes first of the male sex, and then later of thenfemale sex.'). def_xref('BILA:0000049', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000049', 'CARO:0000049'). metadata_db:entity_label('BILA:0000050', 'protogynous hermaphroditic organism'). metadata_db:entity_resource('BILA:0000050', 'bila'). class('BILA:0000050'). subclass('BILA:0000050', 'BILA:0000045'). % sequential hermaphroditic organism def('BILA:0000050', 'Sequential hermaphroditic organism that producesngametes first of the female sex, and then later of thenmale sex.'). def_xref('BILA:0000050', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000050', 'CARO:0000050'). metadata_db:entity_label('BILA:0000051', 'cardiac mesoderm'). metadata_db:entity_resource('BILA:0000051', 'bila'). class('BILA:0000051'). restriction('BILA:0000051', 'OBO_REL:part_of', 'BILA:0000037'). % mesoderm metadata_db:entity_label('BILA:0000052', 'blastomere'). metadata_db:entity_resource('BILA:0000052', 'bila'). class('BILA:0000052'). subclass('BILA:0000052', 'BILA:0000034'). % embryonic structure metadata_db:entity_label('BILA:0000053', 'organizer'). metadata_db:entity_resource('BILA:0000053', 'bila'). class('BILA:0000053'). subclass('BILA:0000053', 'BILA:0000034'). % embryonic structure metadata_db:entity_synonym('BILA:0000053', 'Spemann''s organizer'). metadata_db:entity_synonym_scope('BILA:0000053', 'Spemann''s organizer', 'related'). metadata_db:entity_label('BILA:0000054', 'anatomical group'). metadata_db:entity_resource('BILA:0000054', 'bila'). class('BILA:0000054'). subclass('BILA:0000054', 'BILA:0000003'). % anatomical structure def('BILA:0000054', 'Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue.'). def_xref('BILA:0000054', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000054', 'CARO:0000054'). metadata_db:entity_label('BILA:0000055', 'multi-tissue structure'). metadata_db:entity_resource('BILA:0000055', 'bila'). class('BILA:0000055'). subclass('BILA:0000055', 'BILA:0000003'). % anatomical structure def('BILA:0000055', 'Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types.'). def_xref('BILA:0000055', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000055', 'CARO:0000055'). metadata_db:entity_label('BILA:0000056', 'embryonic organism'). metadata_db:entity_resource('BILA:0000056', 'bila'). class('BILA:0000056'). subclass('BILA:0000056', 'BILA:0000012'). % multi-cellular organism metadata_db:entity_synonym('BILA:0000056', 'developing organism'). metadata_db:entity_synonym_scope('BILA:0000056', 'developing organism', 'related'). metadata_db:entity_label('BILA:0000057', 'zygote embryo'). metadata_db:entity_resource('BILA:0000057', 'bila'). class('BILA:0000057'). subclass('BILA:0000057', 'BILA:0000056'). % embryonic organism metadata_db:entity_label('BILA:0000058', 'cleaving embryo'). metadata_db:entity_resource('BILA:0000058', 'bila'). class('BILA:0000058'). subclass('BILA:0000058', 'BILA:0000056'). % embryonic organism restriction('BILA:0000058', 'develops_from', 'BILA:0000057'). % zygote embryo metadata_db:entity_label('BILA:0000059', 'blastula embryo'). metadata_db:entity_resource('BILA:0000059', 'bila'). class('BILA:0000059'). subclass('BILA:0000059', 'BILA:0000056'). % embryonic organism restriction('BILA:0000059', 'develops_from', 'BILA:0000058'). % cleaving embryo metadata_db:entity_label('BILA:0000060', 'gastrula embryo'). metadata_db:entity_resource('BILA:0000060', 'bila'). class('BILA:0000060'). subclass('BILA:0000060', 'BILA:0000056'). % embryonic organism restriction('BILA:0000060', 'develops_from', 'BILA:0000059'). % blastula embryo metadata_db:entity_label('BILA:0000061', 'neurula embryo'). metadata_db:entity_resource('BILA:0000061', 'bila'). class('BILA:0000061'). subclass('BILA:0000061', 'BILA:0000056'). % embryonic organism restriction('BILA:0000061', 'develops_from', 'BILA:0000060'). % gastrula embryo metadata_db:entity_label('BILA:0000062', 'cell space'). metadata_db:entity_resource('BILA:0000062', 'bila'). class('BILA:0000062'). subclass('BILA:0000062', 'BILA:0000005'). % anatomical space def('BILA:0000062', 'Anatomical space that is part of a cell.'). def_xref('BILA:0000062', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000062', 'CARO:0000062'). metadata_db:entity_label('BILA:0000063', 'portion of cell substance'). metadata_db:entity_resource('BILA:0000063', 'bila'). class('BILA:0000063'). subclass('BILA:0000063', 'BILA:0000004'). % portion of organism substance def('BILA:0000063', 'Portion of organism substance located within a cell.'). def_xref('BILA:0000063', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000063', 'CARO:0000063'). metadata_db:entity_label('BILA:0000064', 'single cell organism'). metadata_db:entity_resource('BILA:0000064', 'bila'). class('BILA:0000064'). subclass('BILA:0000064', 'BILA:0000013'). % cell def('BILA:0000064', 'Cell that is an individual member of a species.'). def_xref('BILA:0000064', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000064', 'CARO:0000064'). metadata_db:entity_label('BILA:0000065', 'basal lamina'). metadata_db:entity_resource('BILA:0000065', 'bila'). class('BILA:0000065'). subclass('BILA:0000065', 'BILA:0000040'). % acellular anatomical structure def('BILA:0000065', 'Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue.'). def_xref('BILA:0000065', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000065', 'CARO:0000065'). metadata_db:entity_label('BILA:0000066', 'epithelium'). metadata_db:entity_resource('BILA:0000066', 'bila'). class('BILA:0000066'). subclass('BILA:0000066', 'BILA:0000043'). % portion of tissue def('BILA:0000066', 'Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.'). def_xref('BILA:0000066', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000066', 'CARO:0000066'). metadata_db:entity_label('BILA:0000067', 'simple cuboidal epithelium'). metadata_db:entity_resource('BILA:0000067', 'bila'). class('BILA:0000067'). subclass('BILA:0000067', 'BILA:0000073'). def('BILA:0000067', 'Unilaminar epithelium that consists of a single layer of cuboidal cells.'). def_xref('BILA:0000067', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000067', 'CARO:0000067'). metadata_db:entity_label('BILA:0000068', 'simple columnar epithlium'). metadata_db:entity_resource('BILA:0000068', 'bila'). class('BILA:0000068'). subclass('BILA:0000068', 'BILA:0000073'). def('BILA:0000068', 'Unilaminar epithelium that consists of a single layer of columnar cells.'). def_xref('BILA:0000068', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000068', 'CARO:0000068'). metadata_db:entity_label('BILA:0000069', 'multilaminar epithelium'). metadata_db:entity_resource('BILA:0000069', 'bila'). class('BILA:0000069'). subclass('BILA:0000069', 'BILA:0000066'). % epithelium def('BILA:0000069', 'Epithelium that consists of more than one layer of epithelial cells.'). def_xref('BILA:0000069', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000069', 'CARO:0000069'). metadata_db:entity_label('BILA:0000070', 'simple squamous epithelium'). metadata_db:entity_resource('BILA:0000070', 'bila'). class('BILA:0000070'). subclass('BILA:0000070', 'BILA:0000073'). def('BILA:0000070', 'Unilaminar epithelium that consists of a single layer of squamous cells.'). def_xref('BILA:0000070', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000070', 'CARO:0000070'). metadata_db:entity_label('BILA:0000071', 'atypical epithelium'). metadata_db:entity_resource('BILA:0000071', 'bila'). class('BILA:0000071'). subclass('BILA:0000071', 'BILA:0000066'). % epithelium def('BILA:0000071', 'Epithelium that consists of epithelial cells not arranged in one ore more layers.'). def_xref('BILA:0000071', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000071', 'CARO:0000071'). metadata_db:entity_label('BILA:0000072', 'cavitated compound organ'). metadata_db:entity_resource('BILA:0000072', 'bila'). class('BILA:0000072'). subclass('BILA:0000072', 'BILA:0000024'). % compound organ def('BILA:0000072', 'Compound organ that contains one or more macroscopic anatomical spaces.'). def_xref('BILA:0000072', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000072', 'CARO:0000072'). metadata_db:entity_label('BILA:0000073', 'unilaminar epithelium'). metadata_db:entity_resource('BILA:0000073', 'bila'). class('BILA:0000073'). subclass('BILA:0000073', 'BILA:0000066'). % epithelium def('BILA:0000073', 'Epithelium that consists of a single layer of epithelial cells.'). def_xref('BILA:0000073', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000073', 'CARO:0000073'). metadata_db:entity_label('BILA:0000074', 'solid compound organ'). metadata_db:entity_resource('BILA:0000074', 'bila'). class('BILA:0000074'). subclass('BILA:0000074', 'BILA:0000024'). % compound organ def('BILA:0000074', 'Compound organ that does not contain macroscopic anatomical spaces.'). def_xref('BILA:0000074', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000074', 'CARO:0000074'). metadata_db:entity_label('BILA:0000075', 'segmenting embryo'). metadata_db:entity_resource('BILA:0000075', 'bila'). class('BILA:0000075'). subclass('BILA:0000075', 'BILA:0000056'). % embryonic organism restriction('BILA:0000075', 'develops_from', 'BILA:0000061'). % neurula embryo metadata_db:entity_label('BILA:0000076', 'juvenile organism'). metadata_db:entity_resource('BILA:0000076', 'bila'). class('BILA:0000076'). subclass('BILA:0000076', 'BILA:0000012'). % multi-cellular organism restriction('BILA:0000076', 'develops_from', 'BILA:0000075'). % segmenting embryo metadata_db:entity_label('BILA:0000077', 'epithelial cell'). metadata_db:entity_resource('BILA:0000077', 'bila'). class('BILA:0000077'). subclass('BILA:0000077', 'BILA:0000013'). % cell def('BILA:0000077', 'Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity.'). def_xref('BILA:0000077', 'CARO:MAH'). metadata_db:entity_xref('BILA:0000077', 'CARO:0000077'). metadata_db:entity_label('BILA:0000078', 'adult organism'). metadata_db:entity_resource('BILA:0000078', 'bila'). class('BILA:0000078'). subclass('BILA:0000078', 'BILA:0000012'). % multi-cellular organism restriction('BILA:0000078', 'develops_from', 'BILA:0000076'). % juvenile organism metadata_db:entity_label('BILA:0000079', 'nervous system'). metadata_db:entity_resource('BILA:0000079', 'bila'). class('BILA:0000079'). subclass('BILA:0000079', 'BILA:0000011'). % anatomical system restriction('BILA:0000079', 'develops_from', 'BILA:0000039'). % neuroectoderm metadata_db:entity_label('BILA:0000080', 'central nervous system'). metadata_db:entity_resource('BILA:0000080', 'bila'). class('BILA:0000080'). restriction('BILA:0000080', 'OBO_REL:part_of', 'BILA:0000079'). % nervous system def('BILA:0000080', 'In physiological terms, a CNS integrates and processes sensory information coming from the periphery, and initiates body-wide responses via neurosecretion into the body fluid or direct stimulation of the body musculature. Anatomically, a CNS is a delimited nervous tissue that comprises distinct agglomerations of functionally specialized neurons (nuclei) interconnected by axon tracts (neuropil). The CNS may be subdivided into separate parts (ganglia). It connects to the periphery via nerves. A CNS thus defined is found in various shapes and degrees of complexity in different animal phyla, including vertebrates and many invertebrates, such as echinoderms, arthropods, nematodes, molluscs and annelids.'). def_xref('BILA:0000080', 'PMID:18192182'). metadata_db:entity_synonym('BILA:0000080', 'CNS'). metadata_db:entity_synonym_scope('BILA:0000080', 'CNS', 'related'). metadata_db:entity_label('BILA:0000081', 'peripheral nervous system'). metadata_db:entity_resource('BILA:0000081', 'bila'). class('BILA:0000081'). restriction('BILA:0000081', 'OBO_REL:part_of', 'BILA:0000079'). % nervous system metadata_db:entity_synonym('BILA:0000081', 'PNS'). metadata_db:entity_synonym_scope('BILA:0000081', 'PNS', 'related'). metadata_db:entity_label('BILA:0000082', 'digestive system'). metadata_db:entity_resource('BILA:0000082', 'bila'). class('BILA:0000082'). subclass('BILA:0000082', 'BILA:0000011'). % anatomical system metadata_db:entity_synonym('BILA:0000082', 'alimentary system'). metadata_db:entity_synonym_scope('BILA:0000082', 'alimentary system', 'related'). metadata_db:entity_label('BILA:0000083', 'digestive tract'). metadata_db:entity_resource('BILA:0000083', 'bila'). class('BILA:0000083'). restriction('BILA:0000083', 'develops_from', 'BILA:0000084'). restriction('BILA:0000083', 'OBO_REL:part_of', 'BILA:0000082'). % digestive system metadata_db:entity_synonym('BILA:0000083', ''). metadata_db:entity_synonym_scope('BILA:0000083', '', 'related'). metadata_db:entity_synonym('BILA:0000083', 'alimentary canal'). metadata_db:entity_synonym_scope('BILA:0000083', 'alimentary canal', 'exact'). metadata_db:entity_synonym('BILA:0000083', 'gastrointestinal tract'). metadata_db:entity_synonym_scope('BILA:0000083', 'gastrointestinal tract', 'exact'). metadata_db:entity_label('BILA:0000084', 'primitive gut'). metadata_db:entity_resource('BILA:0000084', 'bila'). class('BILA:0000084'). subclass('BILA:0000084', 'BILA:0000034'). % embryonic structure metadata_db:entity_label('BILA:0000085', 'foregut'). metadata_db:entity_resource('BILA:0000085', 'bila'). class('BILA:0000085'). restriction('BILA:0000085', 'develops_from', 'BILA:0000036'). % ectoderm restriction('BILA:0000085', 'OBO_REL:part_of', 'BILA:0000083'). % digestive tract metadata_db:entity_label('BILA:0000086', 'midgut'). metadata_db:entity_resource('BILA:0000086', 'bila'). class('BILA:0000086'). restriction('BILA:0000086', 'develops_from', 'BILA:0000038'). % endoderm restriction('BILA:0000086', 'OBO_REL:part_of', 'BILA:0000083'). % digestive tract metadata_db:entity_label('BILA:0000087', 'hindgut'). metadata_db:entity_resource('BILA:0000087', 'bila'). class('BILA:0000087'). restriction('BILA:0000087', 'develops_from', 'BILA:0000036'). % ectoderm restriction('BILA:0000087', 'OBO_REL:part_of', 'BILA:0000083'). % digestive tract metadata_db:entity_label('BILA:0000088', 'musculature system'). metadata_db:entity_resource('BILA:0000088', 'bila'). class('BILA:0000088'). subclass('BILA:0000088', 'BILA:0000011'). % anatomical system metadata_db:entity_label('BILA:0000099', 'sensory system'). metadata_db:entity_resource('BILA:0000099', 'bila'). class('BILA:0000099'). restriction('BILA:0000099', 'OBO_REL:part_of', 'BILA:0000081'). % peripheral nervous system metadata_db:entity_label('BILA:0000103', 'reproductive system'). metadata_db:entity_resource('BILA:0000103', 'bila'). class('BILA:0000103'). restriction('BILA:0000103', 'OBO_REL:part_of', 'BILA:0000122'). metadata_db:entity_label('BILA:0000104', 'immune system'). metadata_db:entity_resource('BILA:0000104', 'bila'). class('BILA:0000104'). subclass('BILA:0000104', 'BILA:0000011'). % anatomical system metadata_db:entity_label('BILA:0000115', 'head'). metadata_db:entity_resource('BILA:0000115', 'bila'). class('BILA:0000115'). subclass('BILA:0000115', 'BILA:0000032'). % organism subdivision def('BILA:0000115', 'The head of an animal is the anterior part that usually comprises the brain, eyes, ears, nose, and mouth.'). def_xref('BILA:0000115', '4DXp:TH'). metadata_db:entity_label('BILA:0000116', 'trunk'). metadata_db:entity_resource('BILA:0000116', 'bila'). class('BILA:0000116'). subclass('BILA:0000116', 'BILA:0000032'). % organism subdivision metadata_db:entity_label('BILA:0000117', 'tail'). metadata_db:entity_resource('BILA:0000117', 'bila'). class('BILA:0000117'). subclass('BILA:0000117', 'BILA:0000032'). % organism subdivision metadata_db:entity_label('BILA:0000118', 'surface'). metadata_db:entity_resource('BILA:0000118', 'bila'). class('BILA:0000118'). subclass('BILA:0000118', 'BILA:0000032'). % organism subdivision metadata_db:entity_synonym('BILA:0000118', 'skin'). metadata_db:entity_synonym_scope('BILA:0000118', 'skin', 'related'). metadata_db:entity_label('BILA:0000122', 'urogenital system'). metadata_db:entity_resource('BILA:0000122', 'bila'). class('BILA:0000122'). subclass('BILA:0000122', 'BILA:0000011'). % anatomical system metadata_db:entity_label('BILA:0000123', 'gonad'). metadata_db:entity_resource('BILA:0000123', 'bila'). class('BILA:0000123'). restriction('BILA:0000123', 'OBO_REL:part_of', 'BILA:0000103'). % reproductive system metadata_db:entity_label('BILA:0000124', 'testis'). metadata_db:entity_resource('BILA:0000124', 'bila'). class('BILA:0000124'). subclass('BILA:0000124', 'BILA:0000123'). % gonad metadata_db:entity_label('BILA:0000125', 'ovary'). metadata_db:entity_resource('BILA:0000125', 'bila'). class('BILA:0000125'). subclass('BILA:0000125', 'BILA:0000123'). % gonad metadata_db:entity_label('BILA:0000126', 'protonephridium'). metadata_db:entity_resource('BILA:0000126', 'bila'). class('BILA:0000126'). restriction('BILA:0000126', 'OBO_REL:part_of', 'BILA:0000015'). % excretory system metadata_db:entity_label('BILA:0000127', 'metanephridium'). metadata_db:entity_resource('BILA:0000127', 'bila'). class('BILA:0000127'). restriction('BILA:0000127', 'OBO_REL:part_of', 'BILA:0000015'). % excretory system metadata_db:entity_label('BILA:0000128', 'nephros'). metadata_db:entity_resource('BILA:0000128', 'bila'). class('BILA:0000128'). metadata_db:entity_label('BILA:0000132', 'visceral muculature'). metadata_db:entity_resource('BILA:0000132', 'bila'). class('BILA:0000132'). subclass('BILA:0000132', 'BILA:0000088'). % musculature system metadata_db:entity_label('BILA:0000133', 'somatic musculature'). metadata_db:entity_resource('BILA:0000133', 'bila'). class('BILA:0000133'). subclass('BILA:0000133', 'BILA:0000088'). % musculature system metadata_db:entity_label('BILA:0000134', 'cardiac musculature'). metadata_db:entity_resource('BILA:0000134', 'bila'). class('BILA:0000134'). subclass('BILA:0000134', 'BILA:0000088'). % musculature system metadata_db:entity_label('BILA:0000135', 'brain'). metadata_db:entity_resource('BILA:0000135', 'bila'). class('BILA:0000135'). restriction('BILA:0000135', 'OBO_REL:part_of', 'BILA:0000080'). % central nervous system metadata_db:entity_label('BILA:0000136', 'nerve cord'). metadata_db:entity_resource('BILA:0000136', 'bila'). class('BILA:0000136'). restriction('BILA:0000136', 'OBO_REL:part_of', 'BILA:0000080'). % central nervous system metadata_db:entity_label('BILA:0000139', 'chemosensory system'). metadata_db:entity_resource('BILA:0000139', 'bila'). class('BILA:0000139'). subclass('BILA:0000139', 'BILA:0000099'). % sensory system metadata_db:entity_label('BILA:0000140', 'photosensory system'). metadata_db:entity_resource('BILA:0000140', 'bila'). class('BILA:0000140'). subclass('BILA:0000140', 'BILA:0000099'). % sensory system metadata_db:entity_label('BILA:0000142', 'mechanosensory system'). metadata_db:entity_resource('BILA:0000142', 'bila'). class('BILA:0000142'). subclass('BILA:0000142', 'BILA:0000099'). % sensory system metadata_db:entity_label('BILA:0000143', 'gustatory system'). metadata_db:entity_resource('BILA:0000143', 'bila'). class('BILA:0000143'). subclass('BILA:0000143', 'BILA:0000139'). % chemosensory system metadata_db:entity_label('BILA:0000144', 'olfactory system'). metadata_db:entity_resource('BILA:0000144', 'bila'). class('BILA:0000144'). subclass('BILA:0000144', 'BILA:0000139'). % chemosensory system metadata_db:entity_label('BILS:0000105', 'bilateria developmental stage'). metadata_db:entity_resource('BILS:0000105', 'bila'). class('BILS:0000105'). metadata_db:entity_label('BILS:0000106', 'zygote stage'). metadata_db:entity_resource('BILS:0000106', 'bila'). class('BILS:0000106'). subclass('BILS:0000106', 'BILS:0000105'). % bilateria developmental stage metadata_db:entity_synonym('BILS:0000106', 'one cell stage'). metadata_db:entity_synonym_scope('BILS:0000106', 'one cell stage', 'related'). metadata_db:entity_label('BILS:0000107', 'cleavage stage'). metadata_db:entity_resource('BILS:0000107', 'bila'). class('BILS:0000107'). subclass('BILS:0000107', 'BILS:0000105'). % bilateria developmental stage restriction('BILS:0000107', 'OBO_REL:preceded_by', 'BILS:0000106'). % zygote stage metadata_db:entity_label('BILS:0000108', 'blastula stage'). metadata_db:entity_resource('BILS:0000108', 'bila'). class('BILS:0000108'). subclass('BILS:0000108', 'BILS:0000105'). % bilateria developmental stage restriction('BILS:0000108', 'OBO_REL:preceded_by', 'BILS:0000107'). % cleavage stage metadata_db:entity_label('BILS:0000109', 'gastrula stage'). metadata_db:entity_resource('BILS:0000109', 'bila'). class('BILS:0000109'). subclass('BILS:0000109', 'BILS:0000105'). % bilateria developmental stage restriction('BILS:0000109', 'OBO_REL:preceded_by', 'BILS:0000108'). % blastula stage metadata_db:entity_label('BILS:0000110', 'neurula stage'). metadata_db:entity_resource('BILS:0000110', 'bila'). class('BILS:0000110'). subclass('BILS:0000110', 'BILS:0000105'). % bilateria developmental stage restriction('BILS:0000110', 'OBO_REL:preceded_by', 'BILS:0000109'). % gastrula stage metadata_db:entity_label('BILS:0000111', 'organogenesis stage'). metadata_db:entity_resource('BILS:0000111', 'bila'). class('BILS:0000111'). subclass('BILS:0000111', 'BILS:0000105'). % bilateria developmental stage restriction('BILS:0000111', 'OBO_REL:preceded_by', 'BILS:0000110'). % neurula stage metadata_db:entity_synonym('BILS:0000111', 'segmentation stage'). metadata_db:entity_synonym_scope('BILS:0000111', 'segmentation stage', 'related'). metadata_db:entity_label('BILS:0000112', 'juvenile stage'). metadata_db:entity_resource('BILS:0000112', 'bila'). class('BILS:0000112'). subclass('BILS:0000112', 'BILS:0000105'). % bilateria developmental stage restriction('BILS:0000112', 'OBO_REL:preceded_by', 'BILS:0000111'). % organogenesis stage metadata_db:entity_label('BILS:0000113', 'adult stage'). metadata_db:entity_resource('BILS:0000113', 'bila'). class('BILS:0000113'). subclass('BILS:0000113', 'BILS:0000105'). % bilateria developmental stage restriction('BILS:0000113', 'OBO_REL:preceded_by', 'BILS:0000112'). % juvenile stage % -- Property/Slot -- property('develops_from'). metadata_db:entity_label('develops_from', 'develops_from'). metadata_db:entity_resource('develops_from', 'bila'). is_transitive('develops_from'). % -- Property/Slot -- property('OBO_REL:preceded_by'). metadata_db:entity_label('OBO_REL:preceded_by', 'preceded_by'). subclass('OBO_REL:preceded_by', 'OBO_REL:relationship'). metadata_db:entity_resource('OBO_REL:preceded_by', 'relationship'). is_transitive('OBO_REL:preceded_by'). def('OBO_REL:preceded_by', 'P preceded_by P'' if and only if: given any process p that instantiates P at a time t, there is some process p'' such that p'' instantiates P'' at time t'', and t'' is earlier than t.'). def_xref('OBO_REL:preceded_by', 'PMID:15892874'). metadata_db:entity_comment('OBO_REL:preceded_by', 'An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.'). inverse_of('OBO_REL:preceded_by', 'OBO_REL:precedes'). % -- Property/Slot -- property('OBO_REL:precedes'). metadata_db:entity_label('OBO_REL:precedes', 'precedes'). subclass('OBO_REL:precedes', 'OBO_REL:relationship'). metadata_db:entity_resource('OBO_REL:precedes', 'bila'). is_transitive('OBO_REL:precedes'). inverse_of('OBO_REL:precedes', 'OBO_REL:preceded_by'). % -- Property/Slot -- property('OBO_REL:relationship'). metadata_db:entity_label('OBO_REL:relationship', 'relationship'). metadata_db:entity_resource('OBO_REL:relationship', 'bila'). def('OBO_REL:relationship', 'A relationship between two classes (terms). Relationships between classes are expressed in terms of relations on underlying instances.'). def_xref('OBO_REL:relationship', 'PMID:15892874'). % -- Property/Slot -- property('OBO_REL:part_of'). metadata_db:entity_label('OBO_REL:part_of', 'part_of'). metadata_db:entity_resource('OBO_REL:part_of', 'bila'). is_transitive('OBO_REL:part_of').