Obol

Obol is the name of a piece of software for automatically generating cross-product definitions (aka genus-differentia definitions) from the names of terms/classes in OBO ontologies. It relies on (a) a consistent grammatical style employed in naming terms or exact synonyms (b) Consistent naming across ontologies

Obol generates results in .obo format, which can also be converted to owl. The results are in the form of genus-differentia definitions, which can then be fed into a reasoner to check for consistency between and within ontologies, or can be used for cross-ontology queries

Obol will also generate synonyms for terms, based on the synonyms of the cross-product component terms. It will also (to a lesser extent) generate textual definitions, based on the xp definition, and the standard definition forms used in GO

Page contents

Result Summary

These results are for automated Obol runs - they are unvetted. For vetted/curated cross-products, please see the logical definitions section of the Berkeley OBO Download Matrix.

Grid View

Each row shows an OBO ontology that has been enhanced/extended with cross-products. Each column shows an OBO ontology that is required in some cross-product file. Each cell shows a cross-product file; a file can be repeated across columns, but not across rows - it only "enhances" one OBO ontology. Click on the file for more info.

{requires}
{extends} adult_mouse_anatomy biological_process caro cell cellular_component chebi fly_anatomy fma_lite molecular_function plant_anatomy plant_environment po_anatomy quality relationship ro_proposed ro_ucdhsc sequence worm_anatomy xenopus_anatomy zebrafish_anatomy
adult_mouse_anatomy  adult_mouse_anatomy_xp-obol
                         adult_mouse_anatomy_xp-obol
           
biological_process  biological_process_xp_anatomy-obol
biological_process_xp_mouse_anatomy-obol
 biological_process_xp-obol
biological_process_xp_regulation_of_function-obol
biological_process_xp_regulation_of_process-obol
biological_process_xp_quality-obol
biological_process_xp_cellular_component-obol
biological_process_xp_self-obol
biological_process_xp_cell-obol
biological_process_xp_sequence-obol
biological_process_xp_chebi-obol
biological_process_xp_anatomy-obol
biological_process_xp_development-obol
biological_process_xp_zebrafish_anatomy-obol
biological_process_xp_xenopus_anatomy-obol
biological_process_xp_human_anatomy-obol
biological_process_xp_fly_anatomy-obol
biological_process_xp_plant_anatomy-obol
biological_process_xp_mouse_anatomy-obol
   biological_process_xp-obol
biological_process_xp_quality-obol
biological_process_xp_cell-obol
biological_process_xp_anatomy-obol
biological_process_xp_development-obol
biological_process_xp_zebrafish_anatomy-obol
biological_process_xp_xenopus_anatomy-obol
biological_process_xp_human_anatomy-obol
biological_process_xp_fly_anatomy-obol
biological_process_xp_plant_anatomy-obol
biological_process_xp_mouse_anatomy-obol
 biological_process_xp-obol
biological_process_xp_quality-obol
biological_process_xp_cellular_component-obol
biological_process_xp_cell-obol
biological_process_xp_anatomy-obol
biological_process_xp_development-obol
biological_process_xp_zebrafish_anatomy-obol
biological_process_xp_xenopus_anatomy-obol
biological_process_xp_human_anatomy-obol
biological_process_xp_fly_anatomy-obol
biological_process_xp_plant_anatomy-obol
biological_process_xp_mouse_anatomy-obol
 biological_process_xp-obol
biological_process_xp_quality-obol
biological_process_xp_sequence-obol
biological_process_xp_chebi-obol
 biological_process_xp_anatomy-obol
biological_process_xp_fly_anatomy-obol
 biological_process_xp_human_anatomy-obol
 biological_process_xp-obol
biological_process_xp_regulation_of_function-obol
biological_process_xp_anatomy-obol
 biological_process_xp_anatomy-obol
   biological_process_xp_plant_anatomy-obol
 biological_process_xp-obol
biological_process_xp_quality-obol
biological_process_xp_zebrafish_anatomy-obol
biological_process_xp_xenopus_anatomy-obol
biological_process_xp_human_anatomy-obol
biological_process_xp_fly_anatomy-obol
biological_process_xp_plant_anatomy-obol
biological_process_xp_mouse_anatomy-obol
 biological_process_xp-obol
biological_process_xp_regulation_of_function-obol
biological_process_xp_regulation_of_process-obol
biological_process_xp_quality-obol
biological_process_xp_cellular_component-obol
biological_process_xp_self-obol
biological_process_xp_cell-obol
biological_process_xp_sequence-obol
biological_process_xp_chebi-obol
biological_process_xp_anatomy-obol
biological_process_xp_development-obol
biological_process_xp_zebrafish_anatomy-obol
biological_process_xp_xenopus_anatomy-obol
biological_process_xp_human_anatomy-obol
biological_process_xp_fly_anatomy-obol
biological_process_xp_plant_anatomy-obol
biological_process_xp_mouse_anatomy-obol
 biological_process_xp-obol
biological_process_xp_regulation_of_function-obol
biological_process_xp_regulation_of_process-obol
biological_process_xp_quality-obol
biological_process_xp_cellular_component-obol
biological_process_xp_self-obol
biological_process_xp_cell-obol
biological_process_xp_sequence-obol
biological_process_xp_chebi-obol
biological_process_xp_anatomy-obol
biological_process_xp_development-obol
biological_process_xp_zebrafish_anatomy-obol
biological_process_xp_xenopus_anatomy-obol
biological_process_xp_human_anatomy-obol
biological_process_xp_fly_anatomy-obol
biological_process_xp_plant_anatomy-obol
biological_process_xp_mouse_anatomy-obol
 biological_process_xp-obol
 biological_process_xp_sequence-obol
   biological_process_xp_xenopus_anatomy-obol
 biological_process_xp_anatomy-obol
biological_process_xp_zebrafish_anatomy-obol
cell        cell_xp-obol
 cell_xp-obol
 cell_xp-obol
             cell_xp-obol
 cell_xp-obol
 cell_xp-obol
         
cellular_component    cellular_component_xp_go-obol
   cellular_component_xp_go-obol
 cellular_component_xp_go-obol
       cellular_component_xp_go-obol
         cellular_component_xp_go-obol
 cellular_component_xp_go-obol
         
dictyostelium_discoideum_anatomy                            dictyostelium_anatomy_xp-obol
           
envo            envo_xp-obol
             envo_xp-obol
 envo_xp-obol
 envo_xp-obol
         
fly_anatomy      fly_anatomy_xp-obol
 fly_anatomy_xp_cell-obol
     fly_anatomy_xp-obol
fly_anatomy_xp_cell-obol
             fly_anatomy_xp-obol
fly_anatomy_xp_cell-obol
           
fma_lite                fma_xp-obol
           fma_xp-obol
           
mammalian_phenotype  mammalian_phenotype_xp-obol
 mammalian_phenotype_xp-obol
   mammalian_phenotype_xp-obol
 mammalian_phenotype_xp-obol
       mammalian_phenotype_xp-obol
       mammalian_phenotype_xp-obol
 mammalian_phenotype_xp-obol
 mammalian_phenotype_xp-obol
         
molecular_function    molecular_function_xp_chebi-obol
molecular_function_xp_go-obol
     molecular_function_xp_go-obol
 molecular_function_xp_chebi-obol
     molecular_function_xp_chebi-obol
molecular_function_xp_go-obol
         molecular_function_xp_chebi-obol
molecular_function_xp_go-obol
 molecular_function_xp_chebi-obol
molecular_function_xp_go-obol
         
plant_trait    plant_trait_xp-obol
     plant_trait_xp-obol
       plant_trait_xp-obol
   plant_trait_xp-obol
 plant_trait_xp-obol
 plant_trait_xp-obol
 plant_trait_xp-obol
 plant_trait_xp-obol
         
po_anatomy        po_anatomy_xp_cell-obol
               po_anatomy_xp-obol
po_anatomy_xp_cell-obol
   po_anatomy_xp-obol
po_anatomy_xp_cell-obol
           
tick_anatomy                            tick_anatomy_xp-obol
 tick_anatomy_xp-obol
         
worm_anatomy                            worm_anatomy_xp-obol
 worm_anatomy_xp-obol
     worm_anatomy_xp-obol
   
worm_phenotype    worm_phenotype_xp-obol
   worm_phenotype_xp-obol
 worm_phenotype_xp-obol
 worm_phenotype_xp-obol
     worm_phenotype_xp-obol
       worm_phenotype_xp-obol
 worm_phenotype_xp-obol
 worm_phenotype_xp-obol
     worm_phenotype_xp-obol
   
zebrafish_anatomy        zebrafish_anatomy_xp_cell-obol
                   zebrafish_anatomy_xp-obol
zebrafish_anatomy_xp_cell-obol
           zebrafish_anatomy_xp-obol
zebrafish_anatomy_xp_cell-obol

Details

adult_mouse_anatomy_xp-obol : automated cross products for adult mouse anatomy (internal) (MA)

Description Automated cross-products for Adult Mouse Anatomy (JAX). All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution!
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/adult_mouse_anatomy_xp.obo
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biological_process_xp-obol : automated cross products for GO biological process and various other ontologies

Description Cross-products for GO process terms to other OBO ontologies, and internal cross-products. This set is currently something of a mixed bag. May be redundancies with other xp files below. Eventually this will be generated automatically from biological_process_xp_*.
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp-obol.obo
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biological_process_xp_anatomy-obol : GO biological process cross products to various anatomy ontologies

Description Definitions of GO biological processes (development, morphogenesis) involving anatomical entity terms taken from a mixture of taxon AOs. EXPERIMENTAL!! There is no one single shared AO with deep coverage. Certain entities such as "antenna" are only represented in a single OBO AO. Others, like "gut" are represented in many. In the latter case we just pick one arbitrarily. This makes this file very problematic! Contrast this approach with the de-novo approach (biological_process_xp_development), and with the taxon-specific contextual approaches (biological_process_xp_fly_anatomy, ...) below
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_anatomy-obol.obo
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biological_process_xp_cell-obol : GO biological process cross products to cell

Description Cross-products for GO process terms to OBO Cell ontology. Automatically generated. Note: currently redundant with go_xp_cell; the two sets will be merged. Examples: neuron differentiation = cell differentiation that results_in_acquisition_of_features_of a neuron. These xps make use of a number of new relations, currently in the ro_proposed holding area. These auto-generated xps are of a reasonably high quality (but have still not been vetted manually).
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_cell-obol.obo
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biological_process_xp_cellular_component-obol : GO biological process cross products to GO cellular_component (internal xps)

Description Cross-products for GO process terms to GO cellular component terms. Examples: spore wall assembly. These xps are internal to GO - no external OBO ontologies are used. May contain numerous syetmatic errors: eg plasma membrane acetate transport = transport of plasma membrane; to be fixed.
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_cellular_component-obol.obo
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biological_process_xp_chebi-obol : GO biological process cross products to chebi, additions

Description Additional Cross-products for GO process terms to ChEBI. Automatically generated as an addition to go_xp_chebi
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_chebi-obol.obo
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biological_process_xp_development-obol : GO biological process cross products to de-novo anatomy ontology

Description The approach taken here is to realize the implicit multi-species anatomical ontology embedded in GO. Highly experimental. For example, the term "brain development" will be used to extract a new term "brain", also used in the definition. These terms are available as "anonymous terms" at the bottom of the file (some of them are further decomposed and defined). This could be the basis of a de-novo multi-species anatomy. It could also be mapped to existing taxon-centric anatomy ontologies. This file provides ALTERNATE xp definitions for those found in the other taxon-centric xp_anatomy files (eg biological_process_xp_zebrafish_anatomy)
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_development-obol.obo
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biological_process_xp_fly_anatomy-obol : GO biological process cross products to fly anatomy

Description Cross-products for GO process terms to fly_anatomy. We "contextualize" the GO terms to insects. As this is automated there will obviously be some mistakes (particularly w.r.t "eye development" and other non-homologous anatomical entities)
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_fly_anatomy-obol.obo
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biological_process_xp_human_anatomy-obol : GO biological process cross products to FMA

Description Cross-products for GO process terms to the Foundational Model of Anatomy (FMA) ontology, which contains classes representing adult anatomical entities. We "contextualize" the GO terms to humans.
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_human_anatomy-obol.obo
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biological_process_xp_mouse_anatomy-obol : GO biological process cross products to PATO

Description Cross-products for GO process terms to MA. We "contextualize" the GO terms to mouse.
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_mouse_anatomy-obol.obo
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biological_process_xp_plant_anatomy-obol : GO biological process cross products to plant anatomy

Description Cross-products for GO process terms to PO. We "contextualize" the GO terms to plants
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_plant_anatomy-obol.obo
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biological_process_xp_quality-obol : GO biological process cross products to PATO (using CL and CHEBI)

Description Cross-products for GO process terms to PATO. This is primarily for "regulation of biological quality" terms. At present, this list of xps is rather limited. It includes xp defs that refer to cellular component types, cell types or chemical entity types (for example: *regulation of autophagic vacuole size*, *reduction of cytosolic calcium ion concentration*). However, qualities of gross anatomical entities (eg *regulation of /blood/ pressure*) are found in the biological_process_xp_*TAXON*_anatomy xp files, not here.
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_quality-obol.obo
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biological_process_xp_regulation_of_function-obol : GO biological process cross products to molecular function regulation terms

Description Cross-products for GO biological process terms that are kinds of regulation of molecular function. See also regulation_of_biological_process and regulation_of_quality
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_regulation_of_function-obol.obo
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biological_process_xp_regulation_of_process-obol : GO biological process cross products to molecular process regulation terms

Description Cross-products for GO biological process terms that are kinds of regulation of biological process. This is exactly the same as the "vetted" file available from the main OBO Downloads page (http://www.berkeleybop.org/ontologies#go_xp_regulation) but is included here for completeness, to mirror the other regulation xps
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_regulation_of_process-obol.obo
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biological_process_xp_self-obol : GO biological process cross products to BP (internal xps)

Description Cross-products for GO biological process terms to other GO biological process terms, excluding those found in biological_process_xp_regulation_of_process. Examples: tolerance induction dependent upon immune response.. These xps are internal to GO - no external OBO ontologies are used.
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_self-obol.obo
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biological_process_xp_sequence-obol : GO biological process cross products to sequence bearing molecules (SO)

Description EXPERIMENTAL. Cross-products for GO process terms to SO. This involves treating SO terms as if they represented molecular entities, rather than the sequences of these entities. This results in some definition clashes with existing xp files (for example, "chromosome localization" is already defined in biological_process_xp_cellular_component); these are mostly excluded.
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_sequence-obol.obo
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biological_process_xp_xenopus_anatomy-obol : GO biological process cross products to xenopus anatomy

Description Cross-products for GO process terms to the Xenopus (frog) anatomy ontology. We "contextualize" the GO terms to frogs.
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_xenopus_anatomy-obol.obo
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biological_process_xp_zebrafish_anatomy-obol : GO biological process cross products to zebrafish anatomy

Description Cross-products for GO process terms to ZFA. We "contextualize" the GO terms to ZFA
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/biological_process_xp_zebrafish_anatomy-obol.obo
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cell_xp-obol : Cell cross products to GO, PATO and CHEBI

Description Automated cross-products for OBO Cell ontology, referencing GO and PATO. Examples: estradiol secreting cell = cell that outputs estradiol; anucleate cell = cell that lacks_part nucleus Some of these are a little dodgy. Eg: contractile cell = cell that has_quality contractile - this is not a good definition
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/cell_xp.obo
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cellular_component_xp_go-obol : GO cellular component cross products within GO

Description Cross-products for GO cellular component terms to other GO terms. Examples: Golgi membrane = membrane that is part_of Golgi apparatus; voltage-gated sodium channel complex
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/cellular_component_xp_go-obol.obo
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dictyostelium_anatomy_xp-obol : automated cross products for dictyostelium anatomy (internal)

Description Automated cross-products for dictyostelium discoideum anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Obol creates terms on-the-fly (anonymous classes) such as "surface sheath" and "mound" in order to create defs for "surface sheath of the mound"
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/dictyostelium_anatomy_xp.obo
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envo_xp-obol : Environment ontology cross-products

Description Cross-products for Environment Ontology. Examples: arsenic-rich mud
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/phenotype_xp/envo_xp-obol.obo
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fly_anatomy_xp-obol : automated cross products for fly anatomy (mostly internal)

Description Automated cross-products for fly anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution!
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/fly_anatomy_xp.obo
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fly_anatomy_xp_cell-obol : promoted cross products for fly anatomy to OBO cell ontology

Description Promoted xrefs; any FB term with an xref to a CL ID is treated as the fly-specific subtype of that cell. We use taxid 7277 (D mel).
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/fly_anatomy_xp_cell.obo
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fma_xp-obol : automated cross products for FMA-lite

Description Automated cross-products for Foundational Model of Anatomy (lite version). All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Examples of generated xp defs: parotid duct = duct that part_of parotid gland
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/fma_xp.obo
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mammalian_phenotype_xp-obol : MP cross products, additions

Description Additional cross-products for MP, generated automatically by Obol. Extends the curated set, mammalian_phenotype_xp. This automated export is occasionally vetted and imported into the curated set
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/phenotype_xp/mammalian_phenotype_xp-obol.obo
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molecular_function_xp_chebi-obol : GO molecular function cross products to chebi

Description Cross-products for GO function terms to ChEBI. Highly incomplete
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/molecular_function_xp_chebi-obol.obo
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molecular_function_xp_go-obol : GO molecular function cross products to the rest of GO

Description Cross-products for GO function terms to rest of GO. Current just structural constituent terms, eg "structural constituent of cell wall". Also a few like "microtubule motor activity"
Source ftp://ftp.geneontology.org/pub/go/scratch/obol_results/molecular_function_xp_go-obol.obo
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plant_trait_xp-obol : plant_trait cross products, additions

Description Additional cross-products for TO, generated automatically by Obol. Extends the curated set, plant_trait_xp.
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/phenotype_xp/plant_trait_xp-obol.obo
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po_anatomy_xp-obol : automated cross products for plant anatomy (internal)

Description Automated cross-products for plant anatomy (internal). All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution!
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/po_anatomy_xp.obo
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po_anatomy_xp_cell-obol : promoted cross products for plant anatomy to OBO cell ontology

Description Promoted xrefs; any PO term with an xref to a CL ID is treated as the plant-specific subtype of that cell. We use taxid 33090 Viridiplantae. Examples: PO:egg_cell is_a CL:egg_cell that part_of some plant. See http://www.bioontology.org/wiki/index.php/CL:Aligning_species-specific_anatomy_ontologies_with_CL
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/plant_anatomy_xp_cell.obo
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tick_anatomy_xp-obol : automated cross products for tick anatomy (internal)

Description Automated cross-products for tick anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Example: Adult midgut lumen = anatomical space that surrounded_by adult midgut
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/tick_anatomy_xp.obo
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worm_anatomy_xp-obol : automated cross products for worm anatomy (internal)

Description Automated cross-products for worm anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution!
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/worm_anatomy_xp.obo
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worm_phenotype_xp-obol : MP cross products, additions

Description Cross-products for worm_phenotype, generated automatically by Obol. As a result of the automatic generation process, suggestions are made for new GO terms to help complete the definitions. E.g. for "necrotic cell death increased" obol creates an on-the-fly process term "necrotic cell death", and attempts to create ab xp def for this term. Most of these should be ignored.
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/phenotype_xp/worm_phenotype_xp-obol.obo
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zebrafish_anatomy_xp-obol : automated cross products for zebrafish anatomy (internal)

Description Automated cross-products for plant anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution!
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/zebrafish_anatomy_xp.obo
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zebrafish_anatomy_xp_cell-obol : promoted cross products for zebrafish anatomy to OBO cell ontology

Description Promoted xrefs; any ZFA term with an xref to a CL ID is treated as the fish-specific subtype of that cell. We use taxid 7955 (D rerio), but it could be more general (teleost? Cypriniforme?). Examples: ZF:erythrocyte is_a CL:nucleate_erythrocyte that part_of some teleost organism. See http://www.bioontology.org/wiki/index.php/CL:Aligning_species-specific_anatomy_ontologies_with_CL
Source http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/zebrafish_anatomy_xp_cell.obo
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Export started on: Wed Oct 24 14:07:45 2007 Completed on: Wed Oct 24 14:35:57 2007

Using the results

Obol produces genus-differentia definitions using the .obo intersection_of tag. For example, the term oocyte growth would be parsed to the following:

[Term]
id: GO:0001555 ! oocyte growth
intersection_of: GO:0040007 ! growth
intersection_of: OBO_REL:results_in_increase_in_mass_of CL:0000023 ! oocyte
          
This can be read as:
oocyte growth is a growth that results_in_increase_in_mass_of an oocyte
You can browse the .obo files directly, or load them into oboedit. If you do this, it is recommended you load the .imports.obo file - this has processing instructions for loading all the dependent cross-product ontologies

You can also use an OWL client, such as Protege or SWOOP. In this case, load the .owl file. Again, you will probably want to use the .imports.owl file

Formats

The following formats are generated. See below for caveats. All indexed ontologies can be downloaded en-masse for any one particular format, see download section below. The format metadata spec can be found Here

Presentations, articles and Papers

Obol: integrating language and meaning in bio-ontologies

Appears in: Comparative and Functional Genomics; Volume 5, Issue 6-7, 2004. Pages 509-520

This is a fairly CS-oriented discussion of the theory behind Obol. The paper also includes the initial Obol results.

Managing complexity in the GO

NOTE: the powerpoint that was previously posted here (prior to 2005/10/22) had lots of missing slides - the correct version is below

This presentation outlines the rationale for Obol by examining both the rise in complexity in GO and inconsistencies between the OBO cell type ontology and the implicit cell type ontology in GO

Obol at Bio-Ontologies 2004

This presentation covers the theory behind how Obol works and presents some initial results, fleshed out in more detail in the paper below

Articles

Your database is talking. Is anyone listening? This article, which appeared in The Scientist, mentions Obol.

OBO Ontology Exports and Metadata Wed Oct 24 14:07:45 2007 Wed Oct 24 14:07:45 2007 automated cross products for plant anatomy (internal) automated cross products for plant anatomy (internal) Automated cross-products for plant anatomy (internal). All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/po_anatomy_xp.obo po_anatomy po_anatomy_xp-obol Automated cross-products for plant anatomy (internal). All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! relationship po_anatomy_xp.obo obo automated cross products for plant anatomy (internal) logical_definitions po_anatomy_xp.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/po_anatomy_xp.obo automated cross products for plant anatomy (internal) exported as obo_xml obo_xml obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.obo_xml 8eeb2043b14e66631b099c53b324d276 1186888715 1193260067 0 99919 automated cross products for plant anatomy (internal) exported as obo obo obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.obo 0eebe5f800271ac961c327358833ab1f 1193260067 1193260067 0 198935 automated cross products for plant anatomy (internal) exported as go_ont go_ont obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.go e74bd78e61d30023f77d91a2ce67f858 1186888716 1193260067 0 4376 automated cross products for plant anatomy (internal) exported as owl owl obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.owl ecddd583f8922f5cfbadccbe9ae62002 1186888717 1193260067 0 268244 automated cross products for plant anatomy (internal) exported as chadoxml chadoxml obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.chadoxml 155a59aa3ff15a6ca78f224dad4f6381 1186888718 1193260067 0 502612 automated cross products for plant anatomy (internal) exported as godb_prestore godb_prestore obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.godb_prestore 0faa00661a30b65d19f571a0a7bd6ee5 1186888719 1193260067 0 239289 automated cross products for plant anatomy (internal) exported as rdf rdf obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.rdf 31ad7c4434285e39cfdcc4ba41fc7842 1186888720 1193260067 0 63165 automated cross products for plant anatomy (internal) exported as tbl tbl obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.tbl 3909be4dca52f3455429bc18c13847f0 1186888720 1193260067 0 11695 automated cross products for plant anatomy (internal) exported as prolog prolog obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.pro fddc9cfd696fcd0f2b428d05776f8a39 1186888721 1193260067 0 68949 automated cross products for plant anatomy (internal) exported as error_report error_report obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1186888721 1193260067 0 0 automated cross products for plant anatomy (internal) exported as validation_report validation_report obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1186888724 1193260067 0 20 automated cross products for plant anatomy (internal) exported as stats stats obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.stats e8a0ad4e229485bd7795e68402bd3e29 1186888724 1193260067 0 4143 automated cross products for plant anatomy (internal) exported as pellet_report pellet_report obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.pellet_report a81a66e41abe5da63d75d9e31289abbc 1186888728 1193260067 0 322 automated cross products for plant anatomy (internal) exported as imports.obo imports.obo obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.imports.obo 4f6b556938a440c094a8252c4aa64103 1186888728 1193260067 0 396 automated cross products for plant anatomy (internal) exported as obo.html obo.html obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.obo.html d03a52b80687160b87216b05301e359b 1186888728 1193260067 0 526043 automated cross products for plant anatomy (internal) exported as imports.owl imports.owl obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.imports.owl bc3f8ef4f2c9ed5b8bd77e688dff3ac3 1186888728 1193260067 0 668 automated cross products for plant anatomy (internal) exported as imports-local.obo imports-local.obo obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.imports-local.obo 4f4c5f1bf4acaad7680e989866121f00 1186888728 1193260067 0 369 automated cross products for plant anatomy (internal) exported as xp.html xp.html obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.xp.html c6bce074835c96ec8205d597f94e244c 1186888735 1193260067 0 1223209 automated cross products for plant anatomy (internal) exported as imports-local.owl imports-local.owl obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.imports-local.owl 90c79efca35fa33609dbfa58d4a74788 1186888736 1193260067 0 3759 automated cross products for plant anatomy (internal) exported as obo-classified-by-oboedit obo-classified-by-oboedit obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.obo-classified-by-oboedit a7e7dd16ef4418bfdf986892c8bb3d2d 1186889134 1193260067 0 297413 automated cross products for plant anatomy (internal) exported as obo-classified-by-blip obo-classified-by-blip obo-all/po_anatomy_xp-obol/po_anatomy_xp-obol.obo-classified-by-blip 6755e8d8576af255642a7e76014a2f1c 1186889145 1193260067 0 24114 2 0 0 2 0 0 0 0 0 0 0 0 0 1 0 [] [organism] [] 0 0 0 0 0 0 0 0 0 0 0 0 true promoted cross products for plant anatomy to OBO cell ontology promoted cross products for plant anatomy to OBO cell ontology Promoted xrefs; any PO term with an xref to a CL ID is treated as the plant-specific subtype of that cell. We use taxid 33090 Viridiplantae. Examples: PO:egg_cell is_a CL:egg_cell that part_of some plant. See http://www.bioontology.org/wiki/index.php/CL:Aligning_species-specific_anatomy_ontologies_with_CL Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/plant_anatomy_xp_cell.obo po_anatomy po_anatomy_cell_xp-obol Promoted xrefs; any PO term with an xref to a CL ID is treated as the plant-specific subtype of that cell. We use taxid 33090 Viridiplantae. Examples: PO:egg_cell is_a CL:egg_cell that part_of some plant. See http://www.bioontology.org/wiki/index.php/CL:Aligning_species-specific_anatomy_ontologies_with_CL relationship cell plant_anatomy_xp_cell.obo obo promoted cross products for plant anatomy to OBO cell ontology logical_definitions plant_anatomy_xp_cell.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/plant_anatomy_xp_cell.obo promoted cross products for plant anatomy to OBO cell ontology exported as obo_xml obo_xml obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.obo_xml d6d12ead9b3f9de0522d359dcee78b54 1186308260 1193260067 0 15212 promoted cross products for plant anatomy to OBO cell ontology exported as obo obo obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.obo 5582698488da0d4a56b1c62ed53d5be8 1193260067 1193260067 0 5165 promoted cross products for plant anatomy to OBO cell ontology exported as go_ont go_ont obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.go 35898bda06cf8e726ebb81ebe72ef8b1 1186308260 1193260067 0 705 promoted cross products for plant anatomy to OBO cell ontology exported as owl owl obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.owl 92ea314c16f6bb3bfd7507c3e40e8950 1186308261 1193260067 0 38739 promoted cross products for plant anatomy to OBO cell ontology exported as chadoxml chadoxml obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.chadoxml d4734dab93f01a455c30b60e65533db3 1186308261 1193260067 0 86305 promoted cross products for plant anatomy to OBO cell ontology exported as godb_prestore godb_prestore obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.godb_prestore 2fa1217d6464d9899fd5f39ec1cf17b9 1186308261 1193260067 0 36069 promoted cross products for plant anatomy to OBO cell ontology exported as rdf rdf obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.rdf ec0eeefe238e9ff840afaa19c866d4b4 1186308262 1193260067 0 8534 promoted cross products for plant anatomy to OBO cell ontology exported as tbl tbl obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.tbl e256e23cc8ec6a6e7abf01fc3f8026e0 1186328298 1193260067 0 611 promoted cross products for plant anatomy to OBO cell ontology exported as prolog prolog obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.pro 6c4674288a2c8114fa67b06becb8b0d1 1186308262 1193260067 0 9544 promoted cross products for plant anatomy to OBO cell ontology exported as error_report error_report obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1186308262 1193260067 0 0 promoted cross products for plant anatomy to OBO cell ontology exported as validation_report validation_report obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1186328299 1193260067 0 20 promoted cross products for plant anatomy to OBO cell ontology exported as stats stats obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.stats 04ffb4bda995f98706d4b7efe26b3c31 1185757811 1193260067 0 2075 promoted cross products for plant anatomy to OBO cell ontology exported as pellet_report pellet_report obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.pellet_report e9187d4c8232a7813a84f979a61b6e58 1185757814 1193260067 0 332 promoted cross products for plant anatomy to OBO cell ontology exported as imports.obo imports.obo obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.imports.obo 92e0aa0021c42ac6e0aecaf1adc8b977 1185757814 1193260067 0 459 promoted cross products for plant anatomy to OBO cell ontology exported as obo.html obo.html obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.obo.html ef37b9fcbfd69d0680069db97d1c8a55 1185757814 1193260067 0 37519 promoted cross products for plant anatomy to OBO cell ontology exported as imports.owl imports.owl obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.imports.owl b0afea3ef154751319a2357b77ab269c 1185757815 1193260067 0 781 promoted cross products for plant anatomy to OBO cell ontology exported as imports-local.obo imports-local.obo obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.imports-local.obo 1d3e02be35ad9d4ab45c1ff0a9f5a614 1185757815 1193260067 0 444 promoted cross products for plant anatomy to OBO cell ontology exported as xp.html xp.html obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.xp.html 0e32ce60a473a6d476f2b478093b8ab2 1185757826 1193260067 0 200274 promoted cross products for plant anatomy to OBO cell ontology exported as imports-local.owl imports-local.owl obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.imports-local.owl b70effff5193020b0726f094d4e693b2 1185757827 1193260067 0 3870 promoted cross products for plant anatomy to OBO cell ontology exported as obo-classified-by-oboedit obo-classified-by-oboedit obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.obo-classified-by-oboedit ddde8869a6ca9b84aa617b5222824886 1186328305 1193260067 0 473316 promoted cross products for plant anatomy to OBO cell ontology exported as obo-classified-by-blip obo-classified-by-blip obo-all/po_anatomy_xp_cell-obol/po_anatomy_xp_cell-obol.obo-classified-by-blip 2cd00137c679351112db838a79159fb8 1185757881 1193260067 0 3153 47 0 0 47 0 95 48 0 0 0 0 0 0 1 0 [] [PO] [] 0 0 0 0 0 0 2.02128 2 3 0 0 0 true automated cross products for zebrafish anatomy (internal) automated cross products for zebrafish anatomy (internal) Automated cross-products for plant anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/zebrafish_anatomy_xp.obo zebrafish_anatomy zebrafish_anatomy_xp-obol Automated cross-products for plant anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! relationship zebrafish_anatomy_xp.obo obo automated cross products for zebrafish anatomy (internal) logical_definitions zebrafish_anatomy_xp.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/zebrafish_anatomy_xp.obo automated cross products for zebrafish anatomy (internal) exported as obo_xml obo_xml obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.obo_xml 67b2914e64894a1e94d632d062a46242 1182791652 1193260068 0 153799 automated cross products for zebrafish anatomy (internal) exported as obo obo obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.obo 3ef67231e2dd93c4b0e2e716da0b5644 1193260068 1193260068 0 250503 automated cross products for zebrafish anatomy (internal) exported as go_ont go_ont obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.go 3609d46da1b0e9f5222e809714f8b301 1182791653 1193260068 0 9854 automated cross products for zebrafish anatomy (internal) exported as owl owl obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.owl 821761bbe1ed34b359a12214df734581 1182791654 1193260068 0 414972 automated cross products for zebrafish anatomy (internal) exported as chadoxml chadoxml obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.chadoxml 4124383bc59997da4f89d0c9b6f6aa49 1182791655 1193260068 0 682760 automated cross products for zebrafish anatomy (internal) exported as godb_prestore godb_prestore obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.godb_prestore df7b60178153c46625a8b8aa879c58ae 1182791656 1193260068 0 332097 automated cross products for zebrafish anatomy (internal) exported as rdf rdf obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.rdf a754de996ef574a0c4d34ac78138dc59 1182791657 1193260068 0 86838 automated cross products for zebrafish anatomy (internal) exported as tbl tbl obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.tbl a0791e5adbbdeebe8295329871592579 1182791658 1193260068 0 20292 automated cross products for zebrafish anatomy (internal) exported as prolog prolog obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.pro a763ec8ac65d4384fdb1e490f8346988 1185226189 1193260068 0 121606 automated cross products for zebrafish anatomy (internal) exported as error_report error_report obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1182791659 1193260068 0 0 automated cross products for zebrafish anatomy (internal) exported as validation_report validation_report obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1182791660 1193260068 0 20 automated cross products for zebrafish anatomy (internal) exported as stats stats obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.stats 38226c121ebed967549b9bf06506276c 1182791661 1193260068 0 2072 automated cross products for zebrafish anatomy (internal) exported as pellet_report pellet_report obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.pellet_report fcdbb9c81d39ef5c9c60b63be51097b8 1185670913 1193260068 0 337 automated cross products for zebrafish anatomy (internal) exported as imports.obo imports.obo obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.imports.obo 4add9a83054c21f1380d6d9af951f573 1183532903 1193260068 0 445 automated cross products for zebrafish anatomy (internal) exported as obo.html obo.html obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.obo.html 9588ac167784c88dc03550a1c1a211ec 1185398405 1193260068 0 662481 automated cross products for zebrafish anatomy (internal) exported as imports.owl imports.owl obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.imports.owl 3826aa47d5ade57f1528b834e2384a1e 1183532903 1193260068 0 696 automated cross products for zebrafish anatomy (internal) exported as imports-local.obo imports-local.obo obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.imports-local.obo 0aa393bfff57e2b0ca721dd39eed1669 1183532903 1193260068 0 418 automated cross products for zebrafish anatomy (internal) exported as xp.html xp.html obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.xp.html fe255e3ff2f3f82da10e4b6d0020f0cd 1185226191 1193260068 0 1402741 automated cross products for zebrafish anatomy (internal) exported as imports-local.owl imports-local.owl obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.imports-local.owl 14c7126b9555086d39c52dca4d03f81c 1183532904 1193260068 0 3822 automated cross products for zebrafish anatomy (internal) exported as obo-classified-by-oboedit obo-classified-by-oboedit obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.obo-classified-by-oboedit dd3b8d38693a85c14bfa5e5cc22a117a 1186889164 1193260068 0 793946 automated cross products for zebrafish anatomy (internal) exported as obo-classified-by-blip obo-classified-by-blip obo-all/zebrafish_anatomy_xp-obol/zebrafish_anatomy_xp-obol.obo-classified-by-blip 47f1b0ee1702d8165479ade1186bb3cf 1182791781 1193260068 0 86465 293 0 293 0 0 0 293 0 0 0 0 0 0 1 0 [] [ZFA] [] 0 0 0 0 0 0 0 0 0 0.501706 0 1 true promoted cross products for zebrafish anatomy to OBO cell ontology promoted cross products for zebrafish anatomy to OBO cell ontology Promoted xrefs; any ZFA term with an xref to a CL ID is treated as the fish-specific subtype of that cell. We use taxid 7955 (D rerio), but it could be more general (teleost? Cypriniforme?). Examples: ZF:erythrocyte is_a CL:nucleate_erythrocyte that part_of some teleost organism. See http://www.bioontology.org/wiki/index.php/CL:Aligning_species-specific_anatomy_ontologies_with_CL Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/zebrafish_anatomy_xp_cell.obo zebrafish_anatomy zebrafish_anatomy_xp_cell-obol Promoted xrefs; any ZFA term with an xref to a CL ID is treated as the fish-specific subtype of that cell. We use taxid 7955 (D rerio), but it could be more general (teleost? Cypriniforme?). Examples: ZF:erythrocyte is_a CL:nucleate_erythrocyte that part_of some teleost organism. See http://www.bioontology.org/wiki/index.php/CL:Aligning_species-specific_anatomy_ontologies_with_CL relationship cell zebrafish_anatomy_xp_cell.obo obo promoted cross products for zebrafish anatomy to OBO cell ontology logical_definitions zebrafish_anatomy_xp_cell.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/zebrafish_anatomy_xp_cell.obo promoted cross products for zebrafish anatomy to OBO cell ontology exported as obo_xml obo_xml obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.obo_xml 926602b7efe66d6920a31ce3bb20c1ed 1185670306 1193260068 0 114111 promoted cross products for zebrafish anatomy to OBO cell ontology exported as obo obo obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.obo 64fa96da76b8ae98a0ea5d462097f3ab 1193260068 1193260068 0 36689 promoted cross products for zebrafish anatomy to OBO cell ontology exported as go_ont go_ont obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.go 86cd94a5f82d8d811cc76e5c580dddb9 1185670308 1193260068 0 5936 promoted cross products for zebrafish anatomy to OBO cell ontology exported as owl owl obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.owl 74b5e2ef0cf868570f5505952c2df56b 1185670309 1193260068 0 271765 promoted cross products for zebrafish anatomy to OBO cell ontology exported as chadoxml chadoxml obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.chadoxml 2aa8349da05506904885e972720152dd 1185670311 1193260068 0 669322 promoted cross products for zebrafish anatomy to OBO cell ontology exported as godb_prestore godb_prestore obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.godb_prestore efedfca6198ca2c0be72f6099d34e9dd 1185670312 1193260068 0 272843 promoted cross products for zebrafish anatomy to OBO cell ontology exported as rdf rdf obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.rdf 4625e9baa16aba77fd2b2d2105926ca2 1185670314 1193260068 0 65976 promoted cross products for zebrafish anatomy to OBO cell ontology exported as tbl tbl obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.tbl 055bee5a2fc4289449a15eb5189f008f 1185670315 1193260068 0 5194 promoted cross products for zebrafish anatomy to OBO cell ontology exported as prolog prolog obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.pro 1f526d051b4b7f00ba557ed269ee2993 1185670316 1193260068 0 74420 promoted cross products for zebrafish anatomy to OBO cell ontology exported as error_report error_report obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1185670316 1193260068 0 0 promoted cross products for zebrafish anatomy to OBO cell ontology exported as validation_report validation_report obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1185670318 1193260068 0 20 promoted cross products for zebrafish anatomy to OBO cell ontology exported as stats stats obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.stats 523e04e4ed051a6ba24b4f3e4a889cc9 1185670319 1193260068 0 2089 promoted cross products for zebrafish anatomy to OBO cell ontology exported as pellet_report pellet_report obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.pellet_report 3a9d69e8fb34138c31f971073c3bcbca 1185670985 1193260068 0 346 promoted cross products for zebrafish anatomy to OBO cell ontology exported as imports.obo imports.obo obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.imports.obo 54420ac761d179d5d5476c0fc3fe5376 1185670325 1193260068 0 508 promoted cross products for zebrafish anatomy to OBO cell ontology exported as obo.html obo.html obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.obo.html d576ffe379cf56e4f68e32483d36304b 1185670325 1193260068 0 289101 promoted cross products for zebrafish anatomy to OBO cell ontology exported as imports.owl imports.owl obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.imports.owl 736065a4c11a18e0e4dd0bd21f888f50 1185670325 1193260068 0 809 promoted cross products for zebrafish anatomy to OBO cell ontology exported as imports-local.obo imports-local.obo obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.imports-local.obo 3694382ed72e41be5cdb001ce70e0841 1185670325 1193260068 0 493 promoted cross products for zebrafish anatomy to OBO cell ontology exported as xp.html xp.html obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.xp.html 7e9cf7d56c132cf0193052b8305e32d6 1185670342 1193260068 0 1470318 promoted cross products for zebrafish anatomy to OBO cell ontology exported as imports-local.owl imports-local.owl obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.imports-local.owl f0a01ae73421ef55ac1e2a481b9d1fc9 1185670342 1193260068 0 3933 promoted cross products for zebrafish anatomy to OBO cell ontology exported as obo-classified-by-blip obo-classified-by-blip obo-all/zebrafish_anatomy_xp_cell-obol/zebrafish_anatomy_xp_cell-obol.obo-classified-by-blip e687dba91e7f01a205f8d13370433c3e 1185670434 1193260072 0 25575 371 0 0 371 0 742 371 0 0 0 0 0 0 1 0 [] [ZFA] [] 0 0 0 0 0 0 2 2 2 0 0 0 true automated cross products for fly anatomy (mostly internal) automated cross products for fly anatomy (mostly internal) Automated cross-products for fly anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/fly_anatomy_xp.obo fly_anatomy fly_anatomy_xp-obol Automated cross-products for fly anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! relationship caro fly_anatomy_xp.obo obo automated cross products for fly anatomy (mostly internal) logical_definitions fly_anatomy_xp.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/fly_anatomy_xp.obo automated cross products for fly anatomy (mostly internal) exported as obo_xml obo_xml obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.obo_xml 5847845c4e55854908f6c03207b2edb2 1185766483 1193260073 0 468479 automated cross products for fly anatomy (mostly internal) exported as obo obo obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.obo 1006fb8f272a725dfea3553f11f9356b 1193260073 1193260074 0 1029159 automated cross products for fly anatomy (mostly internal) exported as go_ont go_ont obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.go 8425766c2b4cdd88e1dfc376e74b9631 1185766487 1193260074 0 29355 automated cross products for fly anatomy (mostly internal) exported as owl owl obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.owl 7297c0d4011a14a020250bcf4114ea85 1185766489 1193260074 0 1238880 automated cross products for fly anatomy (mostly internal) exported as chadoxml chadoxml obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.chadoxml bdda3dd1196de9b40ced94234af7d17a 1185766493 1193260074 0 2286563 automated cross products for fly anatomy (mostly internal) exported as godb_prestore godb_prestore obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.godb_prestore 65059a96456b1e449435bbc7d6f577cb 1185766495 1193260074 0 1067103 automated cross products for fly anatomy (mostly internal) exported as rdf rdf obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.rdf 42d67975517fd534ada478d852403205 1185766498 1193260074 0 281907 automated cross products for fly anatomy (mostly internal) exported as tbl tbl obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.tbl 7cc0aa60370b5a2138f13a0d81e6610e 1185766499 1193260074 0 57781 automated cross products for fly anatomy (mostly internal) exported as prolog prolog obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.pro f0e6c92f5a509296094f19cbd3655c52 1185766503 1193260074 0 369513 automated cross products for fly anatomy (mostly internal) exported as error_report error_report obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1185766503 1193260074 0 0 automated cross products for fly anatomy (mostly internal) exported as validation_report validation_report obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1185766505 1193260074 0 20 automated cross products for fly anatomy (mostly internal) exported as stats stats obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.stats 5c2ca603db451cd2457acbee1db5cb5b 1185766506 1193260074 0 2080 automated cross products for fly anatomy (mostly internal) exported as pellet_report pellet_report obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.pellet_report 58db4ff8314108b7638245a45d15e42a 1185766513 1193260074 0 325 automated cross products for fly anatomy (mostly internal) exported as imports.obo imports.obo obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.imports.obo 354ed358c302bafdce3d8d1757b568a5 1185766513 1193260074 0 458 automated cross products for fly anatomy (mostly internal) exported as obo.html obo.html obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.obo.html 40dd587d748d546c81ed12ce79c5127e 1185766513 1193260074 0 2661493 automated cross products for fly anatomy (mostly internal) exported as imports.owl imports.owl obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.imports.owl d851f9179522f47a7b0055a9506892c6 1185766514 1193260074 0 775 automated cross products for fly anatomy (mostly internal) exported as imports-local.obo imports-local.obo obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.imports-local.obo c8c50412fa524f4ed6ade424e76ef769 1185766514 1193260074 0 431 automated cross products for fly anatomy (mostly internal) exported as xp.html xp.html obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.xp.html 332da0533aa8cde35e86e1eb723600e1 1185766533 1193260074 0 4033194 automated cross products for fly anatomy (mostly internal) exported as imports-local.owl imports-local.owl obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.imports-local.owl 057ddd69db0bdd357c852b5d98fb01ac 1185766533 1193260074 0 3849 automated cross products for fly anatomy (mostly internal) exported as obo-classified-by-oboedit obo-classified-by-oboedit obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.obo-classified-by-oboedit bbf7d29db7f897166ea542961ba2ee66 1186889237 1193260074 0 1507442 automated cross products for fly anatomy (mostly internal) exported as obo-classified-by-blip obo-classified-by-blip obo-all/fly_anatomy_xp-obol/fly_anatomy_xp-obol.obo-classified-by-blip f383bf9602acd41d9072479b2058f029 1185767179 1193260074 0 1739164 1089 0 754 335 0 2178 1089 0 0 0 0 0 0 1 0 [] [FBbt] [] 0 0 0 0 0 0 2 2 2 0.258953 0 3 true promoted cross products for fly anatomy to OBO cell ontology promoted cross products for fly anatomy to OBO cell ontology Promoted xrefs; any FB term with an xref to a CL ID is treated as the fly-specific subtype of that cell. We use taxid 7277 (D mel). Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/fly_anatomy_xp_cell.obo fly_anatomy fly_anatomy_xp_cell-obol Promoted xrefs; any FB term with an xref to a CL ID is treated as the fly-specific subtype of that cell. We use taxid 7277 (D mel). relationship cell fly_anatomy_xp_cell.obo obo promoted cross products for fly anatomy to OBO cell ontology logical_definitions fly_anatomy_xp_cell.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/fly_anatomy_xp_cell.obo promoted cross products for fly anatomy to OBO cell ontology exported as obo_xml obo_xml obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.obo_xml 2b6cd65f67c96fa2d8ecc9dd19a50eed 1186889240 1193260074 0 14784 promoted cross products for fly anatomy to OBO cell ontology exported as obo obo obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.obo 8a80b3c593cc9cd417014c6572629cea 1193260074 1193260074 0 5768 promoted cross products for fly anatomy to OBO cell ontology exported as go_ont go_ont obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.go 9502e02fda7016c1fb9cd6066a5fa0e0 1186889241 1193260074 0 1008 promoted cross products for fly anatomy to OBO cell ontology exported as owl owl obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.owl a19096ffe888e31f1ef8123e64cc29e0 1186889241 1193260074 0 39548 promoted cross products for fly anatomy to OBO cell ontology exported as chadoxml chadoxml obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.chadoxml 783a85e7fd66c7b09a8036e0a694ed51 1186889242 1193260074 0 101200 promoted cross products for fly anatomy to OBO cell ontology exported as godb_prestore godb_prestore obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.godb_prestore 8d34e3b34d4b63dff38de2525f70f14a 1186889242 1193260074 0 40145 promoted cross products for fly anatomy to OBO cell ontology exported as rdf rdf obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.rdf 7f3a277b3638ceb1e473156a90b6b145 1186889242 1193260074 0 10445 promoted cross products for fly anatomy to OBO cell ontology exported as tbl tbl obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.tbl 4369fb994f247043e21fc064cece72ec 1186889243 1193260074 0 896 promoted cross products for fly anatomy to OBO cell ontology exported as prolog prolog obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.pro a0b45b2923ee31b4c63beace30ebf2a7 1186889243 1193260074 0 10839 promoted cross products for fly anatomy to OBO cell ontology exported as error_report error_report obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1186889243 1193260074 0 0 promoted cross products for fly anatomy to OBO cell ontology exported as validation_report validation_report obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1186889244 1193260074 0 20 promoted cross products for fly anatomy to OBO cell ontology exported as stats stats obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.stats 6821c410fef34a047c8c2a4784be9aa9 1186889244 1193260074 0 2065 promoted cross products for fly anatomy to OBO cell ontology exported as pellet_report pellet_report obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.pellet_report 055c48898bbfd19525fe5cdc909cd3e2 1186889248 1193260074 0 334 promoted cross products for fly anatomy to OBO cell ontology exported as imports.obo imports.obo obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.imports.obo 7af0d604fd3f6b70c26b8f990f2c8764 1186889248 1193260074 0 478 promoted cross products for fly anatomy to OBO cell ontology exported as obo.html obo.html obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.obo.html 0eb2a667903cceacc7d877341da4c992 1186889248 1193260074 0 44585 promoted cross products for fly anatomy to OBO cell ontology exported as imports.owl imports.owl obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.imports.owl a5cec6ee309c6a4ebd1e5eaa86ff1e0a 1186889248 1193260074 0 785 promoted cross products for fly anatomy to OBO cell ontology exported as imports-local.obo imports-local.obo obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.imports-local.obo 89ba1e0fd0881bc85d45a9e1d6446493 1186889248 1193260074 0 451 promoted cross products for fly anatomy to OBO cell ontology exported as xp.html xp.html obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.xp.html e635979a24bbef44884531cf276b8b09 1186889264 1193260074 0 209116 promoted cross products for fly anatomy to OBO cell ontology exported as imports-local.owl imports-local.owl obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.imports-local.owl 74d02d14d61612609794b01bd5ca5305 1186889265 1193260074 0 3879 promoted cross products for fly anatomy to OBO cell ontology exported as obo-classified-by-oboedit obo-classified-by-oboedit obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.obo-classified-by-oboedit cdc53f220aa8828ebc0cd9eb171dfc92 1186897787 1193260074 0 1492782 promoted cross products for fly anatomy to OBO cell ontology exported as obo-classified-by-blip obo-classified-by-blip obo-all/fly_anatomy_xp_cell-obol/fly_anatomy_xp_cell-obol.obo-classified-by-blip bbdb4a7082c71df7ca42dbf6bf776376 1186897856 1193260075 0 5054 56 0 0 56 0 112 56 0 0 0 0 0 0 1 0 [] [FBbt] [] 0 0 0 0 0 0 2 2 2 0 0 0 true automated cross products for worm anatomy (internal) automated cross products for worm anatomy (internal) Automated cross-products for worm anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/worm_anatomy_xp.obo worm_anatomy worm_anatomy_xp-obol Automated cross-products for worm anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! relationship ro_proposed worm_anatomy_xp.obo obo automated cross products for worm anatomy (internal) logical_definitions worm_anatomy_xp.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/worm_anatomy_xp.obo automated cross products for worm anatomy (internal) exported as obo_xml obo_xml obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.obo_xml 8089cb1984542ca3ccda3fd9ddabea78 1185503550 1193260076 0 33758 automated cross products for worm anatomy (internal) exported as obo obo obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.obo 464a315899e9c0180f41d5834514e72d 1193260076 1193260076 0 440166 automated cross products for worm anatomy (internal) exported as go_ont go_ont obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.go e5bfaa3840c659225f16620085189b29 1185503551 1193260076 0 3754 automated cross products for worm anatomy (internal) exported as owl owl obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.owl 3d99c36ba0766fedd81926debb2782d8 1185503552 1193260076 0 91107 automated cross products for worm anatomy (internal) exported as chadoxml chadoxml obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.chadoxml 2fe05d376ff4c883b13f29dcded06d94 1185503552 1193260076 0 125834 automated cross products for worm anatomy (internal) exported as godb_prestore godb_prestore obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.godb_prestore 5443f7428955d4b45402f5848cdf7f77 1185503553 1193260076 0 63834 automated cross products for worm anatomy (internal) exported as rdf rdf obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.rdf 7c787b710d7c686dee8ee922fa6d54e9 1185503553 1193260076 0 16008 automated cross products for worm anatomy (internal) exported as tbl tbl obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.tbl 4c0514f4708b784edbb34bc07e89d16f 1185503554 1193260076 0 3879 automated cross products for worm anatomy (internal) exported as prolog prolog obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.pro 85a9d7e8e039cf3c14283a8470edaa72 1185503554 1193260076 0 33796 automated cross products for worm anatomy (internal) exported as error_report error_report obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1185503554 1193260076 0 0 automated cross products for worm anatomy (internal) exported as validation_report validation_report obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1185503556 1193260076 0 20 automated cross products for worm anatomy (internal) exported as stats stats obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.stats 7de2943c732c09960ed9cd2be73ad5b6 1185503556 1193260076 0 2071 automated cross products for worm anatomy (internal) exported as pellet_report pellet_report obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.pellet_report 1bc2dc5e35d042dd20976b26090c6b30 1185672768 1193260076 0 326 automated cross products for worm anatomy (internal) exported as imports.obo imports.obo obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.imports.obo 1b3bc7f43cd95a89db86485a089a47aa 1185503562 1193260076 0 486 automated cross products for worm anatomy (internal) exported as obo.html obo.html obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.obo.html e87ca6c1d4721516abb1124c0d1a8851 1185503562 1193260076 0 627394 automated cross products for worm anatomy (internal) exported as imports.owl imports.owl obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.imports.owl f9b635d015ab383ba1d9742bb6e5f03e 1185503562 1193260076 0 793 automated cross products for worm anatomy (internal) exported as imports-local.obo imports-local.obo obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.imports-local.obo f91fbad4fda62fb4897b7a8b868c38c3 1185503562 1193260076 0 459 automated cross products for worm anatomy (internal) exported as xp.html xp.html obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.xp.html 3aed560864c024a0b4fba7edcc046128 1185503576 1193260076 0 182530 automated cross products for worm anatomy (internal) exported as imports-local.owl imports-local.owl obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.imports-local.owl f946990b84f2bf901397183a6d918e4e 1185503577 1193260076 0 3879 automated cross products for worm anatomy (internal) exported as obo-classified-by-oboedit obo-classified-by-oboedit obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.obo-classified-by-oboedit d8a7fbe5a1009c235ba0c2a15b4d681d 1186897869 1193260076 0 1298786 automated cross products for worm anatomy (internal) exported as obo-classified-by-blip obo-classified-by-blip obo-all/worm_anatomy_xp-obol/worm_anatomy_xp-obol.obo-classified-by-blip 10915022fa83b6c561f72e26c299af7a 1185503662 1193260076 0 23055 44 0 29 15 0 88 44 0 0 0 0 0 0 1 0 [] [WBbt] [] 0 0 0 0 0 0 2 2 2 2.04545 1 3 true automated cross products for tick anatomy (internal) automated cross products for tick anatomy (internal) Automated cross-products for tick anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Example: Adult midgut lumen = anatomical space that surrounded_by adult midgut Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/tick_anatomy_xp.obo tick_anatomy tick_anatomy_xp-obol Automated cross-products for tick anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Example: Adult midgut lumen = anatomical space that surrounded_by adult midgut relationship ro_proposed tick_anatomy_xp.obo obo automated cross products for tick anatomy (internal) logical_definitions tick_anatomy_xp.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/tick_anatomy_xp.obo automated cross products for tick anatomy (internal) exported as obo_xml obo_xml obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.obo_xml 8cfabbfbabb48600fe5c35819722ac9d 1185503664 1193260078 0 56316 automated cross products for tick anatomy (internal) exported as obo obo obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.obo 7d5b81193cbba4aa9e89a99b768e6154 1193260078 1193260078 0 100992 automated cross products for tick anatomy (internal) exported as go_ont go_ont obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.go 2305e335e75432738443fba20f8e7b33 1185503665 1193260078 0 9820 automated cross products for tick anatomy (internal) exported as owl owl obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.owl fb3e4bd2a9c1b1890fb077e1ec536c54 1185503665 1193260078 0 144738 automated cross products for tick anatomy (internal) exported as chadoxml chadoxml obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.chadoxml 81d56bae8e41561ff88b1d1183fe362b 1185503666 1193260078 0 170882 automated cross products for tick anatomy (internal) exported as godb_prestore godb_prestore obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.godb_prestore 2084b9d0e41ec117824994cd76bd54d8 1185503666 1193260078 0 92748 automated cross products for tick anatomy (internal) exported as rdf rdf obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.rdf d8c9de9297c777a96c1496cea2f18f76 1185503667 1193260078 0 24683 automated cross products for tick anatomy (internal) exported as tbl tbl obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.tbl 951d5cd16b81cc1964df46497f7551f8 1185503667 1193260078 0 8829 automated cross products for tick anatomy (internal) exported as prolog prolog obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.pro 82ff1d8046af11df7e2eb474adc23056 1185672997 1193260078 0 68471 automated cross products for tick anatomy (internal) exported as error_report error_report obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1185503668 1193260078 0 0 automated cross products for tick anatomy (internal) exported as validation_report validation_report obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1185503668 1193260078 0 20 automated cross products for tick anatomy (internal) exported as stats stats obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.stats 8914b8d7798670e945054286f713a69c 1185503669 1193260078 0 2072 automated cross products for tick anatomy (internal) exported as pellet_report pellet_report obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.pellet_report 54c4d2bfd06fd284a3b4942a85f2f398 1185672986 1193260078 0 326 automated cross products for tick anatomy (internal) exported as imports.obo imports.obo obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.imports.obo b68d22a8698cf39a6756f82acffefb75 1185672986 1193260078 0 486 automated cross products for tick anatomy (internal) exported as obo.html obo.html obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.obo.html c3ee2607d14cf4b7d6b0e00ad8ea33b3 1185503672 1193260078 0 238328 automated cross products for tick anatomy (internal) exported as imports.owl imports.owl obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.imports.owl 7ae5a8a19399ce2be66bf96ab461ff33 1185672986 1193260078 0 793 automated cross products for tick anatomy (internal) exported as imports-local.obo imports-local.obo obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.imports-local.obo 092e350756be17533d9710e0e47a01a0 1185672987 1193260078 0 459 automated cross products for tick anatomy (internal) exported as xp.html xp.html obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.xp.html 732587f5045c6ed4ad411a654e43ed68 1185672998 1193260078 0 198803 automated cross products for tick anatomy (internal) exported as imports-local.owl imports-local.owl obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.imports-local.owl 1c7a93ac885c6674b305a463dfc59f99 1185672998 1193260078 0 3879 automated cross products for tick anatomy (internal) exported as obo-classified-by-oboedit obo-classified-by-oboedit obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.obo-classified-by-oboedit 865e37a0285c68d040b1eb508985a0fc 1186897875 1193260078 0 347385 automated cross products for tick anatomy (internal) exported as obo-classified-by-blip obo-classified-by-blip obo-all/tick_anatomy_xp-obol/tick_anatomy_xp-obol.obo-classified-by-blip ebec8d3ec7f8500b5c3b3ec403b57030 1185673032 1193260079 0 568 45 0 19 26 0 90 45 0 0 0 0 0 0 1 0 [] [TADS] [] 0 0 0 0 0 0 2 2 2 4.46667 0 22 true automated cross products for dictyostelium anatomy (internal) automated cross products for dictyostelium anatomy (internal) Automated cross-products for dictyostelium discoideum anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Obol creates terms on-the-fly (anonymous classes) such as "surface sheath" and "mound" in order to create defs for "surface sheath of the mound" Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/dictyostelium_anatomy_xp.obo dictyostelium_discoideum_anatomy dictyostelium_anatomy_xp-obol Automated cross-products for dictyostelium discoideum anatomy. All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Obol creates terms on-the-fly (anonymous classes) such as "surface sheath" and "mound" in order to create defs for "surface sheath of the mound" relationship dictyostelium_anatomy_xp.obo obo automated cross products for dictyostelium anatomy (internal) logical_definitions dictyostelium_anatomy_xp.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/dictyostelium_anatomy_xp.obo automated cross products for dictyostelium anatomy (internal) exported as obo_xml obo_xml obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.obo_xml b37415299efb2e45256fed2c60df5658 1192085187 1193260079 0 31962 automated cross products for dictyostelium anatomy (internal) exported as obo obo obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.obo b8c36ab04bff2f2b676bad19b2e6ed74 1193260079 1193260079 0 58089 automated cross products for dictyostelium anatomy (internal) exported as go_ont go_ont obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.go cfdb87044ee942798d9925052c18eba8 1192085188 1193260079 0 2019 automated cross products for dictyostelium anatomy (internal) exported as owl owl obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.owl 542696e2182f58cceb80b3dcdb98cb7a 1192085189 1193260079 0 85606 automated cross products for dictyostelium anatomy (internal) exported as chadoxml chadoxml obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.chadoxml a4acd4910213b63dd33a8c9fe4a43443 1192085189 1193260079 0 148485 automated cross products for dictyostelium anatomy (internal) exported as godb_prestore godb_prestore obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.godb_prestore e0471d97c55f2d26c205e4844abef4f0 1192085190 1193260079 0 71532 automated cross products for dictyostelium anatomy (internal) exported as rdf rdf obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.rdf 7ae8d78440ed25faab037b86f99598d1 1192085190 1193260079 0 19329 automated cross products for dictyostelium anatomy (internal) exported as tbl tbl obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.tbl 8c700f97b2c2937b6bfcee3bc169e0eb 1192085191 1193260079 0 4516 automated cross products for dictyostelium anatomy (internal) exported as prolog prolog obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.pro b44a454df72e587ace762c9af9ff9e40 1192085191 1193260079 0 25583 automated cross products for dictyostelium anatomy (internal) exported as error_report error_report obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1192085191 1193260079 0 0 automated cross products for dictyostelium anatomy (internal) exported as validation_report validation_report obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1192085193 1193260079 0 20 automated cross products for dictyostelium anatomy (internal) exported as stats stats obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.stats c7d54202388236c94735c2da655b9dc0 1192085194 1193260079 0 4138 automated cross products for dictyostelium anatomy (internal) exported as pellet_report pellet_report obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.pellet_report d5094f8a37957c026a696186f16e77d8 1192085198 1193260079 0 344 automated cross products for dictyostelium anatomy (internal) exported as imports.obo imports.obo obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.imports.obo 03c48b0c011a978de14da32b64ce018d 1192085198 1193260079 0 506 automated cross products for dictyostelium anatomy (internal) exported as obo.html obo.html obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.obo.html a726a67421f9fb79fbf6e48d8cfdfdc9 1192085198 1193260079 0 141232 automated cross products for dictyostelium anatomy (internal) exported as imports.owl imports.owl obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.imports.owl 68292792c9d90f39029d57f4d5113d9c 1192085198 1193260079 0 734 automated cross products for dictyostelium anatomy (internal) exported as imports-local.obo imports-local.obo obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.imports-local.obo 732655dc45dc43db04231d2162e3f29d 1192085198 1193260079 0 479 automated cross products for dictyostelium anatomy (internal) exported as xp.html xp.html obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.xp.html 4bd50443a054b79091f374287803bf1c 1192085202 1193260079 0 354137 automated cross products for dictyostelium anatomy (internal) exported as imports-local.owl imports-local.owl obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.imports-local.owl 576902da23b46fe63b61de1385229b85 1192085202 1193260079 0 3891 automated cross products for dictyostelium anatomy (internal) exported as obo-classified-by-oboedit obo-classified-by-oboedit obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.obo-classified-by-oboedit 306ce0e6b3f91bbdee40b62a4686051e 1192085213 1193260079 0 89152 automated cross products for dictyostelium anatomy (internal) exported as obo-classified-by-blip obo-classified-by-blip obo-all/dictyostelium_anatomy_xp-obol/dictyostelium_anatomy_xp-obol.obo-classified-by-blip 7f94244b3089641c6c0ff044607728ba 1192085214 1193260079 0 14602 2 0 0 2 0 0 0 0 0 0 0 0 0 1 0 [] [anatomy] [] 0 0 0 0 0 0 0 0 0 0 0 0 true automated cross products for FMA-lite automated cross products for FMA-lite Automated cross-products for Foundational Model of Anatomy (lite version). All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Examples of generated xp defs: parotid duct = duct that part_of parotid gland Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/fma_xp.obo fma_lite fma_xp-obol Automated cross-products for Foundational Model of Anatomy (lite version). All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Examples of generated xp defs: parotid duct = duct that part_of parotid gland relationship fma_xp.obo obo automated cross products for FMA-lite logical_definitions fma_xp.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/fma_xp.obo automated cross products for FMA-lite exported as obo_xml obo_xml obo-all/fma_xp-obol/fma_xp-obol.obo_xml c8a8d14f78df34266d5e9191a2c94103 1182223029 1193260093 0 8112412 automated cross products for FMA-lite exported as obo obo obo-all/fma_xp-obol/fma_xp-obol.obo c42a8c8baa3ac5fa45b4fecd5a89b781 1193260092 1193260093 0 14018820 automated cross products for FMA-lite exported as go_ont go_ont obo-all/fma_xp-obol/fma_xp-obol.go 598e876a4f60ee16f7bf282d81e87ba8 1182223097 1193260093 0 927118 automated cross products for FMA-lite exported as owl owl obo-all/fma_xp-obol/fma_xp-obol.owl 8284232cff1795e26e47d539a7b35793 1182223155 1193260093 0 20890340 automated cross products for FMA-lite exported as chadoxml chadoxml obo-all/fma_xp-obol/fma_xp-obol.chadoxml d41d8cd98f00b204e9800998ecf8427e 1182223155 1193260094 0 0 automated cross products for FMA-lite exported as godb_prestore godb_prestore obo-all/fma_xp-obol/fma_xp-obol.godb_prestore fc008e5ab40f981984093bcc2799cf0f 1182223755 1193260094 0 17428878 automated cross products for FMA-lite exported as rdf rdf obo-all/fma_xp-obol/fma_xp-obol.rdf e50c4b8debb94766dd2718e243125d4c 1182223820 1193260095 0 4623594 automated cross products for FMA-lite exported as tbl tbl obo-all/fma_xp-obol/fma_xp-obol.tbl 83916bf1f9e498bff20f079f7f050038 1182223858 1193260095 0 937989 automated cross products for FMA-lite exported as prolog prolog obo-all/fma_xp-obol/fma_xp-obol.pro 03756d3bf0079ea9caffd07c28b4cc71 1185924614 1193260095 0 7518202 automated cross products for FMA-lite exported as error_report error_report obo-all/fma_xp-obol/fma_xp-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1182223929 1193260095 0 0 automated cross products for FMA-lite exported as validation_report validation_report obo-all/fma_xp-obol/fma_xp-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1182223963 1193260095 0 20 automated cross products for FMA-lite exported as stats stats obo-all/fma_xp-obol/fma_xp-obol.stats ca035132d00fa2e61f2b0f62ecf76842 1182223965 1193260095 0 2082 automated cross products for FMA-lite exported as pellet_report pellet_report obo-all/fma_xp-obol/fma_xp-obol.pellet_report 49eb7d84e8f2e3e7dd6eb3f1e0603593 1185673176 1193260095 0 313 automated cross products for FMA-lite exported as imports.obo imports.obo obo-all/fma_xp-obol/fma_xp-obol.imports.obo c6c520841c7b4d01330ce4ab4d0b0d3c 1183532956 1193260095 0 362 automated cross products for FMA-lite exported as obo.html obo.html obo-all/fma_xp-obol/fma_xp-obol.obo.html 2e258a4c8488251ac8b31a5ce8ed988a 1185398474 1193260095 0 34514593 automated cross products for FMA-lite exported as imports.owl imports.owl obo-all/fma_xp-obol/fma_xp-obol.imports.owl 2a9169af47051d8ed08d1fe8c5d8e4a4 1183532956 1193260097 0 650 automated cross products for FMA-lite exported as imports-local.obo imports-local.obo obo-all/fma_xp-obol/fma_xp-obol.imports-local.obo 5db1b467077ab14a171e7a3432375bbc 1183532956 1193260097 0 335 automated cross products for FMA-lite exported as xp.html xp.html obo-all/fma_xp-obol/fma_xp-obol.xp.html d41d8cd98f00b204e9800998ecf8427e 1185924683 1193260097 0 0 automated cross products for FMA-lite exported as imports-local.owl imports-local.owl obo-all/fma_xp-obol/fma_xp-obol.imports-local.owl b94149f0717e38bb7339f48a0810915f 1183532956 1193260097 0 3711 automated cross products for FMA-lite exported as obo-classified-by-oboedit obo-classified-by-oboedit obo-all/fma_xp-obol/fma_xp-obol.obo-classified-by-oboedit d41d8cd98f00b204e9800998ecf8427e 1186898627 1193260097 0 0 automated cross products for FMA-lite exported as obo-classified-by-blip obo-classified-by-blip obo-all/fma_xp-obol/fma_xp-obol.obo-classified-by-blip d41d8cd98f00b204e9800998ecf8427e 1185924730 1193260097 0 0 18533 0 3709 14824 0 0 18533 0 0 0 0 0 0 1 0 [] [FMA] [] 0 0 0 0 0 0 0 0 0 0.778287 0 36 true automated cross products for adult mouse anatomy (internal) (MA) automated cross products for adult mouse anatomy (internal) (MA) Automated cross-products for Adult Mouse Anatomy (JAX). All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/adult_mouse_anatomy_xp.obo adult_mouse_anatomy adult_mouse_anatomy_xp-obol Automated cross-products for Adult Mouse Anatomy (JAX). All internal - no other OBO ontologies used. These logical definitions / cross products have been automatically generated - use with caution! relationship adult_mouse_anatomy_xp.obo obo automated cross products for adult mouse anatomy (internal) (MA) logical_definitions adult_mouse_anatomy_xp.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/adult_mouse_anatomy_xp.obo automated cross products for adult mouse anatomy (internal) (MA) exported as obo_xml obo_xml obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.obo_xml b9262bdab32edad0fb7a7bbe078a1956 1183021531 1193260098 0 174877 automated cross products for adult mouse anatomy (internal) (MA) exported as obo obo obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.obo 47846f98b1e9d9309c1a7dabc8b54e53 1193260098 1193260098 0 307407 automated cross products for adult mouse anatomy (internal) (MA) exported as go_ont go_ont obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.go 6475e7101e078eba29e061f7c2e5e9f6 1183021533 1193260098 0 6294 automated cross products for adult mouse anatomy (internal) (MA) exported as owl owl obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.owl 27c20ce5ee82bcbf5b873aa636fa3ff0 1183021534 1193260098 0 478373 automated cross products for adult mouse anatomy (internal) (MA) exported as chadoxml chadoxml obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.chadoxml ca53012f36afe44e7f9f905e7ffd5990 1183021535 1193260098 0 875871 automated cross products for adult mouse anatomy (internal) (MA) exported as godb_prestore godb_prestore obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.godb_prestore 0578f0e23e7c9b69ade316aaf4bb3229 1183021536 1193260098 0 411989 automated cross products for adult mouse anatomy (internal) (MA) exported as rdf rdf obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.rdf 5feb3f0de8b76906a0cb217df34e6ced 1183021537 1193260098 0 107713 automated cross products for adult mouse anatomy (internal) (MA) exported as tbl tbl obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.tbl fad588ee55de65dd7a1c057c53bebea3 1183021538 1193260098 0 22044 automated cross products for adult mouse anatomy (internal) (MA) exported as prolog prolog obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.pro 822641d18f5e3043998fc397fbf484c0 1185227285 1193260098 0 115484 automated cross products for adult mouse anatomy (internal) (MA) exported as error_report error_report obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.error_report d41d8cd98f00b204e9800998ecf8427e 1183021539 1193260098 0 0 automated cross products for adult mouse anatomy (internal) (MA) exported as validation_report validation_report obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.validation_report 201a3711c4c4c5291ddc78943b3254a2 1183021542 1193260098 0 20 automated cross products for adult mouse anatomy (internal) (MA) exported as stats stats obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.stats 8f4d1864c87a1d7c88ca9753f0f805de 1183021542 1193260098 0 2073 automated cross products for adult mouse anatomy (internal) (MA) exported as pellet_report pellet_report obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.pellet_report 867a9ba51cf0770276ad0e66cb60948d 1185677257 1193260098 0 341 automated cross products for adult mouse anatomy (internal) (MA) exported as imports.obo imports.obo obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.imports.obo 3942e1ead5dce28970541b7139f0b339 1183534344 1193260098 0 459 automated cross products for adult mouse anatomy (internal) (MA) exported as obo.html obo.html obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.obo.html 0b27d3e07b455dbe466ca8007e90519c 1185399475 1193260099 0 849679 automated cross products for adult mouse anatomy (internal) (MA) exported as imports.owl imports.owl obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.imports.owl f3202e14614667fec5f9e22f545b3dd0 1183534344 1193260099 0 704 automated cross products for adult mouse anatomy (internal) (MA) exported as imports-local.obo imports-local.obo obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.imports-local.obo afd36ff2f213aee7d9bf57fc257f1f03 1183534344 1193260099 0 432 automated cross products for adult mouse anatomy (internal) (MA) exported as xp.html xp.html obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.xp.html 8fb9552e6a27f04027eff06eaa16b85f 1185227287 1193260099 0 1594909 automated cross products for adult mouse anatomy (internal) (MA) exported as imports-local.owl imports-local.owl obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.imports-local.owl 5699fe7a8762d27cbb385d0fb0b87e54 1183534346 1193260099 0 3840 automated cross products for adult mouse anatomy (internal) (MA) exported as obo-classified-by-oboedit obo-classified-by-oboedit obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.obo-classified-by-oboedit c09bec20115232e468c65b0335d3b584 1186898628 1193260099 0 505191 automated cross products for adult mouse anatomy (internal) (MA) exported as obo-classified-by-blip obo-classified-by-blip obo-all/adult_mouse_anatomy_xp-obol/adult_mouse_anatomy_xp-obol.obo-classified-by-blip b5c59ce4d038e348859e2a371609466a 1183505493 1193260099 0 12810 414 0 414 0 0 0 414 0 0 0 0 0 0 1 0 [] [MA] [] 0 0 0 0 0 0 0 0 0 0.00483092 0 1 true Cell cross products to GO, PATO and CHEBI Cell cross products to GO, PATO and CHEBI Automated cross-products for OBO Cell ontology, referencing GO and PATO. Examples: estradiol secreting cell = cell that outputs estradiol; anucleate cell = cell that lacks_part nucleus Some of these are a little dodgy. Eg: contractile cell = cell that has_quality contractile - this is not a good definition Draft Chris Mungall|cjm@berkeleybop.org no http://www.berkeleybop.org/obol http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/cell_xp.obo cell cell_xp-obol Automated cross-products for OBO Cell ontology, referencing GO and PATO. Examples: estradiol secreting cell = cell that outputs estradiol; anucleate cell = cell that lacks_part nucleus Some of these are a little dodgy. Eg: contractile cell = cell that has_quality contractile - this is not a good definition relationship ro_proposed cellular_component quality chebi cell_xp.obo obo Cell cross products to GO, PATO and CHEBI logical_definitions cell_xp.obo|http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/anatomy_xp/cell_xp.obo Cell cross products to GO, PATO and CHEBI exported as obo_xml obo_xml obo-all/cell_xp-obol/cell_xp-obol.obo_xml dc05f5d0907c7fb6a471714d42adc827 1183499923 1193260099 0 69880 Cell cross products to GO, PATO and CHEBI exported as obo obo obo-all/cell_xp-obol/cell_xp-obol.obo ff28a8d555ba7e87731952ed7857fef6 1193260099 1193260099 0 279386 Cell cross products to GO, PATO and CHEBI exported as go_ont