What do you do with the results?

• Berkeley Output Parser (BOP)

  • Input to BOP:
    • Genomic sequence
    • Results of computational analyses
    • Filtering preferences
  • Parses results from BLAST, sim4, GeneFinder, GenScan, and tRNAscan-SE analyses
  • Filters BLAST and sim4 results
    • Eliminates redundant or insignificant hits
    • Merges hits that represent single region of homology
  • Homogenizes results into single format
    • Output: sequence and filtered results in XML format

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