Promoter recognition
PromoterScan
- Identify potential promoter regions
- Based on databases of known TF binding sites
- TFD (Gosh (1991), TIBS, 16, 445-447)
- TRANSFAC (Heinemeyer et al. (1999), NAR, 27, 318-322)
- Prestridge (1995), JMB, 249, 923-932
- http://bimas.dcrt.nih.gov/molbio/proscan/
MatInd and MatInspector
- Finding consensus matches to known TF binding sites
- Based on TRANSFAC
- Heinemeyer et al. (1999), NAR, 27, 318-322
- Quandt et al. (1995), NAR, 23, 4878-4884.
- http://transfac.gbf.de/TRANSFAC/