Download Data Files

All of the raw data generated for these papers as well as key processing intermediates are available for download. The processed data tables are available as individual files while the unprocessed data and the MIAME compliant data are available as tarred gzipped archives. The arrays were manufactured by Affymetrix and are based on the DrosGenome1 design.

Some data has been removed due to ambiguous gene assignments from the Affymetrix annotations.

• Array Design Information

  • Feature Information (9.0MB) Tab delimited file with three columns. The first column is feature name (probeset name . probe pair # . match info). The second and third columns are the array coordinates of the feature (x, y).
  • Probeset (gene) Information (450KB) Tab delimited file with four columns (probeset name, transcript identifier, gene identifier, gene symbol).
  • Probeset Reference Sequence (6.7MB) FASTA formatted file with each probeset and the sequence upon which it is based.

• From De Gregorio et al. 2002

  • Processed Data Tables

    • Fully Processed Data for Only the DIRGs (128KB) The data are in log(2) ratio format, all replicates are averaged, and the values are time zero corrected. This file can be saved on your computer and opened with Excel or an equivalent spreadsheet .
    • Fully Processed Data (4.0MB) The data are in log(2) ratio format, all replicates are averaged, and the values are time zero corrected.
    • Unaveraged Data (9.7MB) The data are in log(2) ratio form (value /mean value in set), replicates are not averaged, and values are not time zero corrected

  • Raw Data

    • Array Descriptions
    • CEL files (207MB)
    • DAT files (1.3GB)
    • DAT files (403MB)
    • DAT files (650GB)

• From De Gregorio et al. 2001

  • Processed Data Tables

    • Fully Processed Data for Only the DIRGs (80KB) The data are in log(2) ratio format, all replicates are averaged, and the values are time zero corrected. This file can be saved on your computer and opened with Excel or an equivalent spreadsheet .
    • Fully Processed Data (2.75MB) The data are in log(2) ratio format, all replicates are averaged, and the values are time zero corrected.
    • Unaveraged Data (5.5MB) The data are in log(2) ratio form (value /mean value in set), replicates are not averaged, and values are not time zero corrected
    • Reporter Intensities (54MB) The data are presented as the difference between the PM and MM oligos, where missing data indicate that the MM was greater than the PM. Data from each array have been scaled so that the average signal of positive reporter pairs is 1,000

  • MIAME Compliant Data

    • Complete data in MAGE-ML Format Available soon.

  • Raw Collections

    • "CEL" Files (171MB) The complete collection of 51 CEL (Affymetrix feature data) files as well as a text file briefly describing each array. The save as feature is recommended.