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BDGP Resources

Download Miscellaneous Drosophila Sequences

Description Last updated Database (via http) Compressed version (via ftp)
All Fly Sequences
All Drosophila sequences (Release 1 data, not Release 2) 8-Apr-2004 [na\_all.dmel](/data/sequence/sequence_db/na_all.dmel) [na\_all.dmel.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_all.dmel.Z)
Fly Genes from Public Databases
Drosophila sequences from GenBank (minus BDGP, EDGP, and dbEST sequences) 12-Jul-2004 [na\_gb.dmel](/data/sequence/sequence_db/na_gb.dmel) [na\_gb.dmel.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_gb.dmel.Z)
Drosophila dbEST sequences including BDGP from same strain as genomic sequence 10-Jul-2004 [na\_dbEST.same.dmel](/data/sequence/sequence_db/na_dbEST.same.dmel) [na\_dbEST.same.dmel.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_dbEST.same.dmel.Z)
Drosophila dbEST sequences including BDGP from different strain from genomic sequence 10-Jul-2004 [na\_dbEST.diff.dmel](/data/sequence/sequence_db/na_dbEST.diff.dmel) [na\_dbEST.diff.dmel.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_dbEST.diff.dmel.Z)
SPTRreal
Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format November 2003 [aa\_shypo.dmel.embl](/data/sequence/sequence_db/aa_shypo.dmel.embl) [README for aa\_shypo.dmel.embl](/data/sequence/sequence_db/aa_SPTRreal.dmel.README) [aa\_shypo.dmel.embl.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_shypo.dmel.embl.Z)
Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format June 2002 [aa\_shypo.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_shypo.dros.embl.06-20-2002) [README for aa\_shypo.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_SPTRreal.dros.README.06-20-2002) [aa\_shypo.dros.embl.06-20-2002.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_shypo.dros.embl.06-20-2002.Z)
Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format November 2003 [aa\_sreal.dmel.embl](/data/sequence/sequence_db/aa_sreal.dmel.embl) [README for aa\_sreal.dmel.embl](/data/sequence/sequence_db/aa_SPTRreal.dmel.README) [aa\_sreal.dmel.embl.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_sreal.dmel.embl.Z)
Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format June 2002 [aa\_sreal.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_sreal.dros.embl.06-20-2002) [README for aa\_sreal.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_SPTRreal.dros.README.06-20-2002) [aa\_sreal.dros.embl.06-20-2002.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_sreal.dros.embl.06-20-2002.Z)
Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format November 2003 [aa\_thypo.dmel.embl](/data/sequence/sequence_db/aa_thypo.dmel.embl) [README for aa\_thypo.dmel.embl](/data/sequence/sequence_db/aa_SPTRreal.dmel.README) [aa\_thypo.dmel.embl.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_thypo.dmel.embl.Z)
Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format June 2002 [aa\_thypo.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_thypo.dros.embl.06-20-2002) [README for aa\_thypo.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_SPTRreal.dros.README.06-20-2002) [aa\_thypo.dros.embl.06-20-2002.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_thypo.dros.embl.06-20-2002.Z)
Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format November 2003 [aa\_treal.genome.dmel.embl](/data/sequence/sequence_db/aa_treal.genome.dmel.embl) [README for aa\_treal.genome.dmel.embl](/data/sequence/sequence_db/aa_SPTRreal.dmel.README) [aa\_treal.genome.dmel.embl.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_treal.genome.dmel.embl.Z)
Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format June 2002 [aa\_treal.genome.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_treal.genome.dros.embl.06-20-2002) [README for aa\_treal.genome.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_SPTRreal.dros.README.06-20-2002) [aa\_treal.genome.dros.embl.06-20-2002.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_treal.genome.dros.embl.06-20-2002.Z)
Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format November 2003 [aa\_treal.real.dmel.embl](/data/sequence/sequence_db/aa_treal.real.dmel.embl) [README for aa\_treal.real.dmel.embl](/data/sequence/sequence_db/aa_SPTRreal.dmel.README) [aa\_treal.real.dmel.embl.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_treal.real.dmel.embl.Z)
Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format June 2002 [aa\_treal.real.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_treal.real.dros.embl.06-20-2002) [README for aa\_treal.real.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_SPTRreal.dros.README.06-20-2002) [aa\_treal.real.dros.embl.06-20-2002.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_treal.real.dros.embl.06-20-2002.Z)
Repeats
Drosophila Repetitive sequences -- Ashburner, Benos, & Liao 21-Mar-2002 [na\_re.dros](/data/sequence/sequence_db/na_re.dros) [na\_re.dros.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_re.dros.Z)
Drosophila transposable element sequences Please see [Natural Transposable Elements in Release 3 Sequence](/p_disrupt/TE.html#NAT)
Genomic Survey Sequence
Drosophila P element insertion site sequences from BDGP 15-Mar-2002 [na\_pe.dros](/data/sequence/sequence_db/na_pe.dros) [na\_pe.dros.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_pe.dros.Z)
Drosophila STSs from BDGP and EDGP 21-Mar-2002 [na\_STS.dros](/data/sequence/sequence_db/na_STS.dros) [na\_STS.dros.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_STS.dros.Z)
Genomic Clones
BDGP/EDGP Genomic Clone Sequence 20-Mar-2003 [na\_geno\_clones.dros](/data/sequence/sequence_db/na_geno_clones.dros) [na\_geno\_clones.dros.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_geno_clones.dros.Z)
[Other downloads from BDGP](/sequence/download.html)