Berkeley Drosophila Genome Project
BDGP Resources
Download Miscellaneous Drosophila Sequences
| Description | Last updated | Database (via http) | Compressed version (via ftp) |
|---|---|---|---|
| All Fly Sequences | |||
| All Drosophila sequences (Release 1 data, not Release 2) | 8-Apr-2004 | [na\_all.dmel](/data/sequence/sequence_db/na_all.dmel) | [na\_all.dmel.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_all.dmel.Z) |
| Fly Genes from Public Databases | |||
| Drosophila sequences from GenBank (minus BDGP, EDGP, and dbEST sequences) | 12-Jul-2004 | [na\_gb.dmel](/data/sequence/sequence_db/na_gb.dmel) | [na\_gb.dmel.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_gb.dmel.Z) |
| Drosophila dbEST sequences including BDGP from same strain as genomic sequence | 10-Jul-2004 | [na\_dbEST.same.dmel](/data/sequence/sequence_db/na_dbEST.same.dmel) | [na\_dbEST.same.dmel.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_dbEST.same.dmel.Z) |
| Drosophila dbEST sequences including BDGP from different strain from genomic sequence | 10-Jul-2004 | [na\_dbEST.diff.dmel](/data/sequence/sequence_db/na_dbEST.diff.dmel) | [na\_dbEST.diff.dmel.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_dbEST.diff.dmel.Z) |
| SPTRreal | |||
| Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format | November 2003 | [aa\_shypo.dmel.embl](/data/sequence/sequence_db/aa_shypo.dmel.embl) [README for aa\_shypo.dmel.embl](/data/sequence/sequence_db/aa_SPTRreal.dmel.README) | [aa\_shypo.dmel.embl.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_shypo.dmel.embl.Z) |
| Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format | June 2002 | [aa\_shypo.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_shypo.dros.embl.06-20-2002) [README for aa\_shypo.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_SPTRreal.dros.README.06-20-2002) | [aa\_shypo.dros.embl.06-20-2002.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_shypo.dros.embl.06-20-2002.Z) |
| Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format | November 2003 | [aa\_sreal.dmel.embl](/data/sequence/sequence_db/aa_sreal.dmel.embl) [README for aa\_sreal.dmel.embl](/data/sequence/sequence_db/aa_SPTRreal.dmel.README) | [aa\_sreal.dmel.embl.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_sreal.dmel.embl.Z) |
| Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format | June 2002 | [aa\_sreal.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_sreal.dros.embl.06-20-2002) [README for aa\_sreal.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_SPTRreal.dros.README.06-20-2002) | [aa\_sreal.dros.embl.06-20-2002.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_sreal.dros.embl.06-20-2002.Z) |
| Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format | November 2003 | [aa\_thypo.dmel.embl](/data/sequence/sequence_db/aa_thypo.dmel.embl) [README for aa\_thypo.dmel.embl](/data/sequence/sequence_db/aa_SPTRreal.dmel.README) | [aa\_thypo.dmel.embl.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_thypo.dmel.embl.Z) |
| Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format | June 2002 | [aa\_thypo.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_thypo.dros.embl.06-20-2002) [README for aa\_thypo.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_SPTRreal.dros.README.06-20-2002) | [aa\_thypo.dros.embl.06-20-2002.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_thypo.dros.embl.06-20-2002.Z) |
| Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format | November 2003 | [aa\_treal.genome.dmel.embl](/data/sequence/sequence_db/aa_treal.genome.dmel.embl) [README for aa\_treal.genome.dmel.embl](/data/sequence/sequence_db/aa_SPTRreal.dmel.README) | [aa\_treal.genome.dmel.embl.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_treal.genome.dmel.embl.Z) |
| Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format | June 2002 | [aa\_treal.genome.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_treal.genome.dros.embl.06-20-2002) [README for aa\_treal.genome.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_SPTRreal.dros.README.06-20-2002) | [aa\_treal.genome.dros.embl.06-20-2002.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_treal.genome.dros.embl.06-20-2002.Z) |
| Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format | November 2003 | [aa\_treal.real.dmel.embl](/data/sequence/sequence_db/aa_treal.real.dmel.embl) [README for aa\_treal.real.dmel.embl](/data/sequence/sequence_db/aa_SPTRreal.dmel.README) | [aa\_treal.real.dmel.embl.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_treal.real.dmel.embl.Z) |
| Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format | June 2002 | [aa\_treal.real.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_treal.real.dros.embl.06-20-2002) [README for aa\_treal.real.dros.embl.06-20-2002](/data/sequence/sequence_db/aa_SPTRreal.dros.README.06-20-2002) | [aa\_treal.real.dros.embl.06-20-2002.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_treal.real.dros.embl.06-20-2002.Z) |
| Repeats | |||
| Drosophila Repetitive sequences -- Ashburner, Benos, & Liao | 21-Mar-2002 | [na\_re.dros](/data/sequence/sequence_db/na_re.dros) | [na\_re.dros.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_re.dros.Z) |
| Drosophila transposable element sequences | Please see [Natural Transposable Elements in Release 3 Sequence](/p_disrupt/TE.html#NAT) | ||
| Genomic Survey Sequence | |||
| Drosophila P element insertion site sequences from BDGP | 15-Mar-2002 | [na\_pe.dros](/data/sequence/sequence_db/na_pe.dros) | [na\_pe.dros.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_pe.dros.Z) |
| Drosophila STSs from BDGP and EDGP | 21-Mar-2002 | [na\_STS.dros](/data/sequence/sequence_db/na_STS.dros) | [na\_STS.dros.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_STS.dros.Z) |
| Genomic Clones | |||
| BDGP/EDGP Genomic Clone Sequence | 20-Mar-2003 | [na\_geno\_clones.dros](/data/sequence/sequence_db/na_geno_clones.dros) | [na\_geno\_clones.dros.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_geno_clones.dros.Z) |